MmuALTD0008691-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000079184 | Mphosph8
Description
M-phase phosphoprotein 8 [Source:MGI Symbol;Acc:MGI:1922589]
Coordinates
chr14:57292728-57295455:+
Coord C1 exon
chr14:57292728-57293576
Coord A exon
chr14:57293577-57293612
Coord C2 exon
chr14:57295359-57295455
Length
36 bp
Sequences
Splice sites
5' ss Seq
ATGGTTGGT
5' ss Score
5.29
3' ss Seq
TTGCATTCATTATTCTTTAGGAG
3' ss Score
7.54
Exon sequences
Seq C1 exon
AGATTAAAATAAGAGAAGATGTCAAAGAGAACCGAAAAACAAAAAAAGAGAGATATATAGAATCTCCGCTGGAGTCTGAATCGCCTAATGATTCCCTCATTCTAGAGGATGACAGTGAAGACTTTATTTCTGACAACAGAGAAGAGAATCAGAATGTGAGAAGTGTAAGAGATAAGACAGCACAGGAGACAGTGCAAGAGGGTATTTTTGAGAAACATCTGGATGACCTTATAAGTATTGAAGAGGATGCTGGTACCCGAGTTAGAAGGAAGAAGACGAAGCCAAGAAAGTTTGAGGAACCAAAAGAGATCAAGAAGCTTGAAAGCACGAATGCCTTTTTAGAAAGGAGAGCAATACCCAAAAAGCAAAGAAACCAAGACAAGGGCATAAGTAACCTAGAGTTAAATAAGCTACCATCACCTGTGTTTGCCCAAACCCTGAAAAGTTCCAGACTGAGTGGGGAAGAGAAGAGCCTAAAGTCCCCTGACTTGGCAGAAGAG
Seq A exon
GTAAAGTTGGTGGAGAACTTGAAGAGTACAGATATG
Seq C2 exon
GAGAAAGAGAAAAAAAATGAACCCAAAGGAAAATACCAGAAAAGGTATGATTTGGACAAAGAAGAAAAAGCCAGAAAAGAGCCAAAGGTATTAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079184-3-4,4-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.877
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGCCTAAAGTCCCCTGA
R:
ACCTTTGGCTCTTTTCTGGCT
Band lengths:
124-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: