Special

MmuALTD0009399-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121655019-121655708:+
Coord C1 exon
chr9:121655019-121655106
Coord A exon
chr9:121655107-121655110
Coord C2 exon
chr9:121655563-121655708
Length
4 bp
Sequences
Splice sites
5' ss Seq
TACGTATGT
5' ss Score
5.54
3' ss Seq
TATGCTTTCTGTGTTTAAAGCGC
3' ss Score
7.57
Exon sequences
Seq C1 exon
GAACATTCCAGATGTTGCACCTGTTGTAAGTGATCAGAAACCCTCTGTATCAAAGTCTGGACGGAAAATCAAAGGAAGAGGCACGATT
Seq A exon
GTAC
Seq C2 exon
CGCTATCACACACCTCCAAGGTCAAGATCCCACTCTGAGTCCAAAGATGATGACAGCAGTGAAACCCCTCCTCACTGGAAGGAGGAGATGCAGAGACTGAGAGCCTACAGGCCCCCGAGCGGAGAGAAGTGGAGCAAAGGAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-23-19,24-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption when splice site is used (sequence inclusion)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.920 A=NA C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000128472





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000035112, ENSMUSP00000128472f2989A, ENSMUSP00000128472f2990A
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr3:42676197-42676198 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr22:15398067-15398068 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr2:1859382-1859383 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCCAGATGTTGCACCTGTTGT

				
R: 
CCTTGGAGGTGTGTGATAGCG

				
Band lengths: 
103-107

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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