MmuALTD0009399-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121745901-121746590:+
Coord C1 exon
chr9:121745901-121745988
Coord A exon
chr9:121745989-121745992
Coord C2 exon
chr9:121746445-121746590
Length
4 bp
Sequences
Splice sites
5' ss Seq
TACGTATGT
5' ss Score
5.54
3' ss Seq
TATGCTTTCTGTGTTTAAAGCGC
3' ss Score
7.57
Exon sequences
Seq C1 exon
GAACATTCCAGATGTTGCACCTGTTGTAAGTGATCAGAAACCCTCTGTATCAAAGTCTGGACGGAAAATCAAAGGAAGAGGCACGATT
Seq A exon
GTAC
Seq C2 exon
CGCTATCACACACCTCCAAGGTCAAGATCCCACTCTGAGTCCAAAGATGATGACAGCAGTGAAACCCCTCCTCACTGGAAGGAGGAGATGCAGAGACTGAGAGCCTACAGGCCCCCGAGCGGAGAGAAGTGGAGCAAAGGAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-42-32,43-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGTTGCACCTGTTGT
R:
CCTTGGAGGTGTGTGATAGCG
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types