RnoALTD0020090-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130384932-130385599:+
Coord C1 exon
chr8:130384932-130385019
Coord A exon
chr8:130385020-130385023
Coord C2 exon
chr8:130385454-130385599
Length
4 bp
Sequences
Splice sites
5' ss Seq
TACGTATGT
5' ss Score
5.54
3' ss Seq
TTACCCTCTCTGGTTTAAAGCGC
3' ss Score
7.08
Exon sequences
Seq C1 exon
GAATGTTCCAGATGTTGCACCTGTTGTAAGTGATCAGAAACCATCTGTATCAAAGTCTGGACGGAAAATCAAGGGAAGAGGAACAATT
Seq A exon
GTAC
Seq C2 exon
CGCTATCACACACCTCCAAGGTCAAGATCCCACTCCGAGTCCGAAGATGATGACAGCAGTGAAACCCCACCTCACTGGAAGGAGGAGATGCAGAGACTGAGAGCCTACAGGCCACCGAGCGGAGAGAAGTGGAGCAAAGGAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128-13-15,14-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGTTGCACCTGTTGT
R:
CCTTGGAGGTGTGTGATAGCG
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]