MmuALTD0009496-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000015094 | Npdc1
Description
neural proliferation, differentiation and control 1 [Source:MGI Symbol;Acc:MGI:1099802]
Coordinates
chr2:25408905-25409494:+
Coord C1 exon
chr2:25408905-25408976
Coord A exon
chr2:25408977-25409001
Coord C2 exon
chr2:25409099-25409494
Length
25 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TTGACCCAGTATCTTCACAGACA
3' ss Score
3.22
Exon sequences
Seq C1 exon
GCATAAGGAACCTCCAAAGGAACTAGAGTCAGCTTCCTCCGATGAGGAAAATGAAGATGGCGACTTCACTGT
Seq A exon
GTATGAATGCCCAGGCCTGGCGCCA
Seq C2 exon
ACAGGGGAGATGGAGGTGCGCAACCCACTGTTTGACCATTCCACGCTGTCAGCACCAGTGCCTGGTCCCCATTCCTTGCCGCCGCTGCAGTGACTCCTAGGCCCACATGCCTGCAGCCCACAGCCCACCAGTGGGGACGAGCGAGTCCTGGTGTTCCCCATGGAAAAGAGCAGCATTGTGACCCCCGCATGCTTTTGGCAGGAGGGAGGCGCCACCCCTGGACTCCCTTGCCAGGGAGATTCTCCGCCTTATGTGGGAGATCTAGCATCTGCTTGCACATTCTCTGTCTGGTATGAACCCTCAAACTGGAGATCCAAGTCCAGGAACCCTAGAGCCCAGGCATGGATAGAGAGTTTTGGAGACAAAAGCCAATTAAAGTTTTTTTCAAACCTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015094-26-38,27-38-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=NA C2=0.933
Domain overlap (PFAM):
C1:
PF068096=NPDC1=FE(11.7=100)
A:
NA
C2:
PF068096=NPDC1=PD(10.6=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATGGCGACTTCACTGT
R:
TGTGGGCCTAGGAGTCACTG
Band lengths:
128-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types