MmuALTD0009759-3/4 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:144781523-144787339:+
Coord C1 exon
chr3:144781523-144781623
Coord A exon
chr3:144781624-144781750
Coord C2 exon
chr3:144787175-144787339
Length
127 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGTG
5' ss Score
3.11
3' ss Seq
GAATAACATATGTTTCCTAGCTT
3' ss Score
1.95
Exon sequences
Seq C1 exon
CCGATGAGGGCGGGGCGTCCGTTTCCACAGAAACCGCAGGCCGGTTACTAGCAACGTTGAGCTCCAAGGTGGACGCGCTCAGGCCGCCGCTGCCTGTTCTG
Seq A exon
GTGACTCGTCAGCTTCTCTCCCCGCGCTCCCTGCCCTTCCCTCTGGCCTCCTACTCTCTCTGCACTCTCCGCCTGCTGCAGTGACCCAGGGCCGGGCAGGCCTCAGAGAGGCCTCCGGCCATTGTAG
Seq C2 exon
CTTTCAGTGTCTGTGGAAAAGTTGTTGCTGAAGTGCCTGTAAAAGAGTCACTGAGTTGATGGAGATGCCTACTAGTGATGGAAGTCTTTCAGAGGGCCTGATTTCTTATCTCATCCGGGAGAGAGGATCTGCTCCACAGTGTGCCCCTGAGAAGCACCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256-0-0,1-0,2-0,3-0-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.198
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTCCGTTTCCACAGAAA
R:
CTTCTCAGGGGCACACTGTG
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: