MmuINT0112718 @ mm9
Intron Retention
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:144781553-144787339:+
Coord C1 exon
chr3:144781553-144781746
Coord A exon
chr3:144781747-144787174
Coord C2 exon
chr3:144787175-144787339
Length
5428 bp
Sequences
Splice sites
5' ss Seq
ATTGTAGGT
5' ss Score
3.34
3' ss Seq
GAATAACATATGTTTCCTAGCTT
3' ss Score
1.95
Exon sequences
Seq C1 exon
AAACCGCAGGCCGGTTACTAGCAACGTTGAGCTCCAAGGTGGACGCGCTCAGGCCGCCGCTGCCTGTTCTGGTGACTCGTCAGCTTCTCTCCCCGCGCTCCCTGCCCTTCCCTCTGGCCTCCTACTCTCTCTGCACTCTCCGCCTGCTGCAGTGACCCAGGGCCGGGCAGGCCTCAGAGAGGCCTCCGGCCATT
Seq A exon
GTAGGTAGTGGCGGCGGCGGGGGATGACGTCAGGGCGACGGGCGGACGGGCGGGCGGGCGCGAGTCTGGGGTGGGCTCTGAGGGCGGGCCGCGCGTGACCCTAGGCACCCGGAAGTGAAACCCGTGGTGCCCACCCCTCCTGAACAGTATGTGTTTGGTGCTCAGGTCCTCACTGTCACCCAGAGGAAAGCGGACATTGTGCCCCTGCTTCCCGCGGTGTGGTCTCGGGGCGCCGGGGAGAAGTTAGCGGGGGATAGGGTCCCTGCAGAGCGAGGGTCCGGGTTTGGGGGTGTTTCCGACATAGTGTTTTCCTAATCTTGAGCTCACCCGATGCCAGTCCAGTTCTTGACGTACCCCGAGTCATGTCCCCTGTCTCTGGCACTGAATATGTCAGTTGAGTAACCTTAACCTAACGGTGGCTGCTATTGGTGACCCTAAAGACCAAGTTTCTCTGTCACGCCATGGCTTACAAGGGTGTCAAATGTTTGAGGGTACGAGTGCCTCTGGTTTAGGTAAAGGATCAAACTGTAGAAATCGTGCCTGTTTGTAAGCTTTACTTCATACCTTTGATTAATGGTGAGACCGGCCATATTTGTAATTTTTAATAGCAAAGTATTATTATTGCTGTTTTCTGCTAATTCTACAACTGGTGTATATTAATAGTTTTAGTCTTTGCTTTTCGAGCGTCTCAAGATCTGAGCAGATAGCCTCATTTATTCGTCACTTTTGTTAACTCCATACAGACAAATGGGAGTCAGGATGAGTATAGAAACGATCCGTTGCAGGCCACTGATGCCCCCAACCCCCACCCTCTGGTTTAGTAGTTCTCCATTTATGACTGCTTCAGCAATGACTTTCTACAAAGAACAGATAGGTCTTCAAGGTTGTTCTGTAAAATCAGTTCTGATCAACTCAGGCTTGTAAGTAAATTTAAGGTAGGTTGGTTAATTCAGGATAATTACTTTAAAAAGGAGAAAGTGGAAAAAACGTGAAGATTGCTGAGCTGCCCCGCAGAGTGGGCCAGATGGCATCTAAGTTTAAAGGTGGGATAAAGTAAGATGAGTCCAGGGATTCTACTTCTTGCTCAGTGTGTCACCGTGACTCTAAACCACCCCTGTTGCTGTCCTTGATGGTCATCCGTGGTCCTAACATCTGCAGTATCCTGGGATCTTTAACCAGTGGCCTCTTCTGTCCTTTCATTGTACCAGTCCTCAGTTTCTTTCCGTGACACTTGCAATCCTTGTGTATCCACTGCATTTCTCCAATAACATCTCCTGGGCTTTCCTTAGAAACCCTTGCCTAATCATTCCAAGCCTCGGTTTGTATTCATTGCCTCTTCAGTCCTGAGGCCTGCACTACGATGGGGGGCTGCTCTGTCATCGGTGGCTTTCTGACCTCTATGCTGGTCTCCAGTCCTGTCATACGGTGTCAACCCTCAGCTGCTCTCCGTGGTCCCTTTACTCCTTGAAAACCAGAGCCATGTGGAAAACTCCTAACACATTACTAAGTTTAGCTACCACTTAAGGTACAGCCTTGGCCTCCCTGAACCACCGCTTCCCAGAAGAGTTCACCTCAGCAGTGCTGGTCACTTATTAATTATAACTACTTTTGCAGCTCAGGCCAACCAGCATCCATTGTAAAGCAAAGATTTTGTTTCAGTGCTGCTGGTTTCCTGTTGACTCTTCAGCCCCAGCTGACCAGAAGCCACAGATTCTTATTCAATTAACCTCTCTGAATCATAAATGTCACCCTGTTCCCTCACTCACACCCAATCATTTTGATAGCTTTTATTTAGAAATCTGTTTTCCTGCTTTGGTCATTTTTGCTTATCTATTTCTAAGTTTCACTTTTTTTTTTCCATAGTGGAGTCTAAAATGCTATGCAATTATCTCTTTGGTAAGTTTTGACTAGTTTCCAGAATACAGAGAAAAAGCATCTTTCTTACATCTACTTTCTGTTTCTTGCTGAGTATTTGAATTTTTGGATGTTATTTTAATAGAATTTGCATGCTGTTGTTTGAAGTCACATGATTTTGATTTTCAGGGATTGGTGTTTAGCAAACAAACACTTATGGAATTCTATGCTTTCTCGTCAGGGAGAGTAGTTTTTAACCAACATTTGCCTAAACTAGTCTAGGTGCTATGATCTTTTCTAATGCTATTGTTCATGAGCATCCATCCCTTAACACACTTACTGATCAAAATGGAACACAATACTGTGGTTATAGCTACATCTGCAATGCCATTATCACCCTTGACAGGTTAAAAAAAATCATAATACTGATGGTGACGAATTTGCTCAGACTTGTGTAGGATGGGTCACTAACAAGTTGTACAGAAATGCAATGTTTGTCAGTTAGCCATGCCTTGCACATAACTGAAAACTTGGGCAGAACACTCAGTTTCTATTAGAAAAAAATGCCTTTAGTGAACTGAAATGAGAGTATATTTTATAAAGATGGGATATTTTATAAATGAAAGAGAAGTGTAGCATTTGGTTCGGCAGGCAAGCATTTTTATAGTAAGGAAAGCATTATATTTGTTCATCTACTTTTGGTTCCAGAATTGTCATAACACAAAACAGTGAGATGTCTTCAGACATGTGCAGTCTTTGTCTCGTAGAGTATGACTTCTTATAACTTCTGTGAGAATATGTGACACTCACCTACTTGTCTGCTTTGAGTTGGGAATGATAATATCGAGGAAGTCTTTCTTAGATCCCATCCTGCTTTCCTTTCTCTTCTGTGATAAAATGCCTCAACAGAGCACTTTTAAGAGAAGAACAGTTATTTGACTTACAATTCAGATTGTAATCACTCATCCTTGTAGCCAAGACAGCAGGAGCTTGAAGCAGTCAGCCACACCCACAGTCAGGACAGGAGGGAGACTGAATGCATGCATGCATGCTTCTCTTTGCTCTCTCTCTTTTATTTAGGGCTCAACCTATGGTATAGTGTCACCTACAGCCAGCATGTTTCTTTCCACCTCAGCCCAGCTAAGAAAACCTCTGACAGGTATACCCAGTAGGCAGCCCAATTAAAGCTGTTCCTCATTGAGACTGCTTTGTTAGAGTTCTAGATTATGTCTAGATGATAATTATCTACCACGGGTCCCTATTTCTGCCACACTTTTACCATTTAAGATGTAGTTAATATTTGTAGGTGATGAAGCAAAAAAAAATTGCTTTCTAATTTGTGATAAAATTTTTAGAATAGTGTGTGTGAGTGTATGTGTGTATGTGTGTGTGTGTTGGCATGTGTACCAGTACCCAGAACTCAATACATGAGAACTCACTTAAATTACTGATGCTAAATGATTTTCATTTTATGAAATATTTTCTAAGAATGGAAGATTCTTAACCTCTCATGCTGGTTTTAAGTTTTTCTTCTAAATATAGAAACATCTTTCTTTTAACCCCTAGAAAGGTCAGTCAAGAGTTGGATATGTGAAAAGCAGTCGTTGGCCATGTTTGTTGGGAGTGCTAAGCTTTGCATACTTTCCAGGCATTCCTGAATTCTCCAAAGCTTGTAGGTGCTTAGGATTCAACTCTAAATAAGACATTCTTTCTTGAGATCCCAGCCTGTGGAGAGAGAAATATTTAAACAGATAAATGAGAAAAAGATAAATGCTAATCGCCCCCGAGGGGCTGTGGCAGTTACAAACTAAACAGACCCACAGGGGAGTTTGCTGGGATGTCACAGAGCCTGCTTCTCTTTATCCTTAGTTTGGCTTTTCATGTGACCTGTGCATTTAAGGTTCTACTGGGCTGTATGTAAATATCTCCATATATTCTCTACAGCGTGATTTTTGTAGTAACAGATGTTACACAACTCAGCAGCAAGAGATCCAGGAGGAGTATCACAGGCCCTCTGGGTTATTCTTCTTTTTGAATTTTAGCTGCTAAATATTTGTCTCTGCATTGTATATTGAAGCATCAGACAAAAATTGATGCATTTTTTGCAGGTTTTCTGGGAGGTTTGTGACTTGCTAATTAAATATTTTGAATAGTTTCAACCTACTATTTCACATGTACCTAAACTAATGAAAATTTCTTGAACATAATGTATTTTAATAGGGAAATCTAAGACTAAATCTTAAATATTTGAAAAGCAATATAGAAAACACAAAACATGACTTTTAATCTTGTATGAACAGCCACAACAAAAAAGACACATGACCATTTCTAACTAGAGTTGTGAAAACTTAGTCTCAATGTTGCTGATGTGTTAATTCATCACTTTAAATGGGCCAACTTGGGAGGAATTCATCTATAGCCAGTCACTTGTAAAAAATAACATCTTCAGGGCTAAATGAGAAGATTTTTGCTAAAGTCCAGAAGTACTGTCATTTTTAATTATTATCTTCATCAGCAAAGAGTATTATTCTTGATTGAGTTGGAAATGGGAATGAAGAAGTGTAACAAGAAGGATGACTTTCAAAATAACATTTTATGTGCTCTGCCGCAGTTGTTGGGAAGTGTGTTTAATGTTGGTGCATTGAGTTTCTGCAGTTGTAAGAGGAAACAGGTTCTGTTGCCTAGGCCAGATGGAACTAGTACAAAATCCACCATGGTCTGCATATTTGTTTTCTAGTCCTTTTGGGTGAATATTGAAGGATTGCTATAATACTCCAGGAAATAGACCAATAAAGATAACTACATTTGGGCCTAGAGAGATAGCTCAGTGGTTAAGAGTGCTTGCTGTCACCCAGGCGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAAGCAGGTGGATTTCTGAGTTGGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAACAACAACAACAAAAAAGAGTGCTTGCTGTCCTTGCTGAAGACCCAAGTTCAGTCCCAGTAGCTACGCAATCCCTGTATAACTCCAGCTCCAGGGGACTCTGCTCTCCATGTTGCCAACTCCCTAAGACTCATGTGCACATACCCACGCACAGATGCAAGATTAAATAAAATCTAAAAAGTGATCTTGTGTATGTGTATGTATATATATGCAAGCCTTTCAAAAATGTATATGGAAACTTGGAATTGGTAAATTATTATGCAATGCAATTTTGATATTATTTTAAGGTAACTAGAACATAAGTGAGTAGCATTTATAATTTTTTAAGACAGTGCCTCACTATGTAGCCCTAGTTAGCCTGGAGCTTGCTAGGTAAACTGGGTAGCCTTAAACTCACAGAGATCTGCCTCCACCTGCCTCTTAAGTGCTAAGATTAAAGACATGCACAGCCATGCCCTAATAGCAGTTATAATTATATATTGCCTTTGAAGCATTTATACATAATTGAGATCTTTAAATCACAGAATAATGAAAGGAAACAATCCCTCCTGAAATGATAAGTTGAATAACATATGTTTCCTAG
Seq C2 exon
CTTTCAGTGTCTGTGGAAAAGTTGTTGCTGAAGTGCCTGTAAAAGAGTCACTGAGTTGATGGAGATGCCTACTAGTGATGGAAGTCTTTCAGAGGGCCTGATTTCTTATCTCATCCGGGAGAGAGGATCTGCTCCACAGTGTGCCCCTGAGAAGCACCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256-Odf2l:NM_001162538:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.198
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: