MmuALTD0009801-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026761 | Orc4
Description
origin recognition complex, subunit 4 [Source:MGI Symbol;Acc:MGI:1347043]
Coordinates
chr2:48940333-48949231:-
Coord C1 exon
chr2:48949117-48949231
Coord A exon
NA
Coord C2 exon
chr2:48940333-48940400
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TTCTTTTTTTTTTTTTTTAGGAT
3' ss Score
13.14
Exon sequences
Seq C1 exon
GTGCGCGGTGGGCTGCAGTAGGAGCAGCGGGACTGAGAAGGTGGTGAACATCCTTCGGTCCTCACCGTCGGCGGCGGCCGGCTTTGCCCGATTTAGGCAGGCTTGACTGGGAGAG
Seq A exon
NA
Seq C2 exon
GATTTGAATTAATCGAGATGAGCAGTCGTAAAACCAAGAGTAATGCACATGCAGAGTGTCTTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026761-2-9,3-9,4-9-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.397
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGAACATCCTTCGGTCC
R:
TGGTTTTACGACTGCTCATCTCG
Band lengths:
111-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types