HsaALTD0004501-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000115947 | ORC4L
Description
origin recognition complex, subunit 4 [Source:HGNC Symbol;Acc:8490]
Coordinates
chr2:148733471-148778292:-
Coord C1 exon
chr2:148778202-148778292
Coord A exon
chr2:148778177-148778201
Coord C2 exon
chr2:148733471-148733544
Length
25 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTATGCCAATTTTTTTAAAGGAT
3' ss Score
7.7
Exon sequences
Seq C1 exon
GTCCGCAGCGGCAGGTGAAGTCTAGCAGAGGACGCGGCCAGGCGATTCGGTGAAGCGATTCCTGCAGGCGTTGGTTCCCCTCTTTGACCTG
Seq A exon
GTAAATGCAGGCTTTTATGCGAGAG
Seq C2 exon
GATTTGAATTTGTTGAAATGAGCAGTCGTAAATCAAAGAGTAACAGCTTAATTCACACAGAGTGCCTTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115947-1-9,2-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.217
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTCTAGCAGAGGACGC
R:
ACTCTTTGATTTACGACTGCTCA
Band lengths:
118-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)