HsaEX0044829 @ hg19
Exon Skipping
Gene
ENSG00000115947 | ORC4L
Description
origin recognition complex, subunit 4 [Source:HGNC Symbol;Acc:8490]
Coordinates
chr2:148731017-148778463:-
Coord C1 exon
chr2:148778202-148778463
Coord A exon
chr2:148733471-148733544
Coord C2 exon
chr2:148731017-148731093
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTATGCCAATTTTTTTAAAGGAT
3' ss Score
7.7
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGAAGTCGCTACGCTTTTAACACCCCCAGCTCCCTCCTCCTTCCTAAGGGAAAGTGGAGGAACGGAAGTGGGCGTGGACGGAGACGAAAGGAGGTCACGTGTTTGGGCGGGAGAGGGGCGGGGTGGGAGAGGTAGTGCGTGCGCGGGGCATGCCGGGAGTGGTTGTGTACGGTCCGCAGCGGCAGGTGAAGTCTAGCAGAGGACGCGGCCAGGCGATTCGGTGAAGCGATTCCTGCAGGCGTTGGTTCCCCTCTTTGACCTG
Seq A exon
GATTTGAATTTGTTGAAATGAGCAGTCGTAAATCAAAGAGTAACAGCTTAATTCACACAGAGTGCCTTTCACAG
Seq C2 exon
GTACAAAGAATTTTACGTGAAAGATTTTGTCGTCAGAGTCCACATAGTAACCTATTTGGAGTGCAAGTACAATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115947-'1-10,'1-9,5-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.217 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF131911=AAA_16=PU(10.0=34.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCGGGAGTGGTTGTGTA
R:
AGGTTACTATGTGGACTCTGACGA
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)