MmuEX6101119 @ mm10
Exon Skipping
Gene
ENSMUSG00000026761 | Orc4
Description
origin recognition complex, subunit 4 [Source:MGI Symbol;Acc:MGI:1347043]
Coordinates
chr2:48937452-48950277:-
Coord C1 exon
chr2:48950118-48950277
Coord A exon
chr2:48940333-48940400
Coord C2 exon
chr2:48937452-48937528
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTTTTTTTTAGGAT
3' ss Score
13.14
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TCACCCCGGAGCTCCACTGCGTATGAGGTTTGGTGCTACTGCTGCCCCGGAGTGAAAGTCAGAGCCAGAGGAAGGCAATGGAGCCCCCACAGACACACTTACCTTTCCTGCCCCCCACTTTTGAGTGCCTTCCCTGGAGCTGTGGAGGATGACACAAAGG
Seq A exon
GATTTGAATTAATCGAGATGAGCAGTCGTAAAACCAAGAGTAATGCACATGCAGAGTGTCTTTCACAG
Seq C2 exon
GTACAAAGAATTTTACGTGAAAGATTTTGTCATCATAGTCCACATAGCAACCTCTTTGGAGTGCAAGTACAATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026761-'0-11,'0-9,9-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.397 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF131911=AAA_16=PU(23.1=34.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGTGAAAGTCAGAGCCAG
R:
TTGCACTCCAAAGAGGTTGCT
Band lengths:
179-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types