RnoEX0062397 @ rn6
Exon Skipping
Gene
ENSRNOG00000005021 | Orc4
Description
origin recognition complex, subunit 4 [Source:RGD Symbol;Acc:735212]
Coordinates
chr3:33062477-33075685:-
Coord C1 exon
chr3:33075584-33075685
Coord A exon
chr3:33065366-33065432
Coord C2 exon
chr3:33062477-33062553
Length
67 bp
Sequences
Splice sites
3' ss Seq
CCTATTTTCATTTTTTTTAGATT
3' ss Score
9.94
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CTTGGCTGCCGCAGGTGAAACAGAGCTGGGAAGGCGGTGAACAATCCTGGGTCCTTACAGTCGGCGGAGGCTGCCCGATTTAGGCAGGCTTTATTGAGAGAG
Seq A exon
ATTTGAGTTAGTCAAGATGAGCAATCGTAAAAGCAAGAATAACATACATGCAGAGTGTCTTTCCCAG
Seq C2 exon
GTACAAAGAATTTTACGTGAAAGGTTTTGTCATCATACTCCTCATAGCAACCTATTTGGAGTGCAAGTACAATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005021_MULTIEX2-4/4=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.235 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF131911=AAA_16=PU(5.8=34.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGAAACAGAGCTGGGAA
R:
TGTATTGTACTTGCACTCCAAATAGG
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]