BtaEX0025423 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015291 | ORC4
Description
Bos taurus origin recognition complex, subunit 4 (ORC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001046301]
Coordinates
chr2:48282736-48334440:+
Coord C1 exon
chr2:48282736-48282818
Coord A exon
chr2:48326470-48326543
Coord C2 exon
chr2:48334364-48334440
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATTATTTTTTAAAGGAT
3' ss Score
8.15
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CTGCAGGTGAAGCAGAGCAGAGAACGCTGCGAGAGGAACCTGTGAAGCGATTCCCACCGTCTCCGGAATCTCGCTCTGCCCTG
Seq A exon
GATTTCAGTTTGTGGAAATGAGCAGTCGTAAATCAAAGAGTAGCAACTTAATACAAGCAGACTACATTTCACAG
Seq C2 exon
GTACAAAGAATTTTACGTGAAAGATTTTGTCATCAGAGTCCACATGGTAACCTATTTGGAGTACAAGTACAATATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015291_MULTIEX1-3/14=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF131911=AAA_16=PU(5.8=34.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGAAGCAGAGCAGAGAA
R:
TGTACTTGTACTCCAAATAGGTTACC
Band lengths:
151-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development