GgaEX1041340 @ galGal4
Exon Skipping
Gene
ENSGALG00000012448 | ORC4
Description
origin recognition complex, subunit 4 [Source:HGNC Symbol;Acc:HGNC:8490]
Coordinates
chr7:34070788-34072973:-
Coord C1 exon
chr7:34072923-34072973
Coord A exon
chr7:34072483-34072554
Coord C2 exon
chr7:34070788-34070864
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATCCTCTTTCTTATTTAAAGATA
3' ss Score
6.92
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
CGGGAGGGGCGCGCGCGCGCGCGAAGGCGGCGGTTGACGGCGTCGCCTCAG
Seq A exon
ATAGAATCTTCTGCAATGAATAAACGGAAGTTAAAGGAAAGCAGTGGTACAGATGGGGAATGCATCTCGCAG
Seq C2 exon
GTGCAGAAAATGTTACGTGAAAGACTGTGTCACCATCGTGCTATGGGGAAATTGTTTGGGGTTGATCAGCAGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012448-'1-7,'1-1,3-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF131911=AAA_16=PU(5.8=34.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]