DreEX0052680 @ danRer10
Exon Skipping
Gene
ENSDARG00000101161 | orc4
Description
origin recognition complex, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2224]
Coordinates
chr6:906641-907740:-
Coord C1 exon
chr6:907728-907740
Coord A exon
chr6:906797-906853
Coord C2 exon
chr6:906641-906717
Length
57 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGTAGGTG
3' ss Score
9.9
5' ss Seq
CTGGTCTGT
5' ss Score
3.05
Exon sequences
Seq C1 exon
GGAGCATATATGG
Seq A exon
GTGAAGATGAGCAAGCGAAGGCCAGCCGCTCTCTCTGATGTCCAGTGTGTCTCTCTG
Seq C2 exon
GTTCAGGAGCTCCTGCGGGAGAGATTGTGTCATCAGAAGTTGCCAGATCAGCCCATAGGCCTCGACTCACAGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101161_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF131911=AAA_16=PU(10.8=34.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]