HsaEX0044830 @ hg19
Exon Skipping
Gene
ENSG00000115947 | ORC4L
Description
origin recognition complex, subunit 4 [Source:HGNC Symbol;Acc:8490]
Coordinates
chr2:148733471-148778319:-
Coord C1 exon
chr2:148778177-148778319
Coord A exon
chr2:148739497-148739650
Coord C2 exon
chr2:148733471-148733544
Length
154 bp
Sequences
Splice sites
3' ss Seq
GTTATTTAATTTTCAATTAGGAA
3' ss Score
6.03
5' ss Seq
ATGGTTTGC
5' ss Score
1.51
Exon sequences
Seq C1 exon
GGGGCATGCCGGGAGTGGTTGTGTACGGTCCGCAGCGGCAGGTGAAGTCTAGCAGAGGACGCGGCCAGGCGATTCGGTGAAGCGATTCCTGCAGGCGTTGGTTCCCCTCTTTGACCTGGTAAATGCAGGCTTTTATGCGAGAG
Seq A exon
GAAGCCTGGAGCCAGAGGACTTTTGGTGGCTGAGGCCTTAGCTACCTGGCTTACACATTAAGGAGGACACAGATTTGCTTGCTGTCTGTCTGTCAAGGCCTGGCTCAGCTAAGGACCTGTTAACATTTCTAGAGAAGAAAACAGCATTACCATG
Seq C2 exon
GATTTGAATTTGTTGAAATGAGCAGTCGTAAATCAAAGAGTAACAGCTTAATTCACACAGAGTGCCTTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115947-'2-9,'2-7,3-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.217
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCGGGAGTGGTTGTGTA
R:
ACTCTGTGTGAATTAAGCTGTTACT
Band lengths:
202-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)