MmuALTD0010162-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87762212-87763358:-
Coord C1 exon
chr3:87763264-87763358
Coord A exon
chr3:87763225-87763263
Coord C2 exon
chr3:87762212-87762281
Length
39 bp
Sequences
Splice sites
5' ss Seq
AGAGTTAGT
5' ss Score
0.9
3' ss Seq
GCTGAGTTTCCCCCTTTTAGAAT
3' ss Score
7.53
Exon sequences
Seq C1 exon
GTCTCTGCTGACCCCATCTTGGCTTCTAGCCCTGAGCAGGGCAGCTGAGGACTCCTCCGCAGTGCAGCCCCACCCTGAAGGCCGTCGGAAGGAGG
Seq A exon
GCAGGTAGCCTTTCTCCAGTCAGCTACCCTCTTAGCAGA
Seq C2 exon
AATCTAGATCTTGAGCACTGGGATCCACAGAACATCACCTGGCTGCCTAGGCCCATGCTGGCCATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-7-9,8-9,9-9-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGCTGACCCCATCTTGG
R:
TGTGGATCCCAGTGCTCAAGA
Band lengths:
123-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types