MmuEX1019755 @ mm10
Exon Skipping
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87762212-87768948:-
Coord C1 exon
chr3:87768878-87768948
Coord A exon
chr3:87763225-87763358
Coord C2 exon
chr3:87762212-87762281
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTTGTCCACCCACAGGTC
3' ss Score
11.27
5' ss Seq
AGAGTTAGT
5' ss Score
0.9
Exon sequences
Seq C1 exon
GCTCTGTCGGCCAGCAGGACCCGTCGGTACAACACGCCGCTCTGAGCTCCGAGCTCCGAGCCCCGAGGCAG
Seq A exon
GTCTCTGCTGACCCCATCTTGGCTTCTAGCCCTGAGCAGGGCAGCTGAGGACTCCTCCGCAGTGCAGCCCCACCCTGAAGGCCGTCGGAAGGAGGGCAGGTAGCCTTTCTCCAGTCAGCTACCCTCTTAGCAGA
Seq C2 exon
AATCTAGATCTTGAGCACTGGGATCCACAGAACATCACCTGGCTGCCTAGGCCCATGCTGGCCATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-'2-9,'2-8,9-9
Average complexity
C2
Mappability confidence:
91%=100=75%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTCGGCCAGCAGGA
R:
CAGTGATGGCCAGCATGGG
Band lengths:
140-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types