RnoEX0064788 @ rn6
Exon Skipping
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187125345-187133993:-
Coord C1 exon
chr2:187133960-187133993
Coord A exon
chr2:187127998-187128096
Coord C2 exon
chr2:187125345-187125506
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCCTATTGTCCACCCACAGGTC
3' ss Score
11
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GCCATTCCCCTCCGAACTGCGAGCTCCGAGGCAG
Seq A exon
GTCTCCACTGACCCCATCTTGGCTTCTAGCCCTGGACAGAGCAACAGAAGACTCCTCCACAATGCAGCCACACCCTGAAGGTGGTTGGAAGGAGGGAAG
Seq C2 exon
ATGTGTCCTTCCGGCTGCTGGCTGCAGTGCTGTTCTGTTGTTGGGTGCCCTGTGGCAGGCTTGTGCAATGCCACTCTGTCCCCTCCTCCTCCTGGCCCTAGGCCTGCGTCTGGCTGGAACACTCAACTCCAATGATCCCAATGTCTGTACCTTCTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(12.2=28.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTCCCCTCCGAACTG
R:
ATTGGAGTTGAGTGTTCCAGCC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]