RnoEX0064789 @ rn6
Exon Skipping
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187125345-187133993:-
Coord C1 exon
chr2:187133960-187133993
Coord A exon
chr2:187127059-187127129
Coord C2 exon
chr2:187125345-187125506
Length
71 bp
Sequences
Splice sites
3' ss Seq
GCTGAGTCCCCCCTTTTTAGGAT
3' ss Score
8.17
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCCATTCCCCTCCGAACTGCGAGCTCCGAGGCAG
Seq A exon
GATCTAGGTCCTGAGCACTGGAATTCCCCAGAACAGCATCTGGCTTCCCAGACCCATGCTGGCCACCACTG
Seq C2 exon
ATGTGTCCTTCCGGCTGCTGGCTGCAGTGCTGTTCTGTTGTTGGGTGCCCTGTGGCAGGCTTGTGCAATGCCACTCTGTCCCCTCCTCCTCCTGGCCCTAGGCCTGCGTCTGGCTGGAACACTCAACTCCAATGATCCCAATGTCTGTACCTTCTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(12.2=28.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTCCCCTCCGAACTG
R:
ATTGGAGTTGAGTGTTCCAGCC
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]