MmuEX0034398 @ mm9
Exon Skipping
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87564146-87572870:-
Coord C1 exon
chr3:87572800-87572870
Coord A exon
chr3:87566134-87566203
Coord C2 exon
chr3:87564146-87564307
Length
70 bp
Sequences
Splice sites
3' ss Seq
GCTGAGTTTCCCCCTTTTAGAAT
3' ss Score
7.53
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTCTGTCGGCCAGCAGGACCCGTCGGTACAACACGCCGCTCTGAGCTCCGAGCTCCGAGCCCCGAGGCAG
Seq A exon
AATCTAGATCTTGAGCACTGGGATCCACAGAACATCACCTGGCTGCCTAGGCCCATGCTGGCCATCACTG
Seq C2 exon
ATGTGTCCTTCCGGCTGCTGGCTGCAGTGCTGTTTTGTTACCGTGTGCCCTATCGCAGGCCTCTGCAATGCCACTTTGTCCCCTCCTCCTCCTGGCCCTAGGCCTGCGTCTGACTGGGACACTCAACTCCAATGATCCCAATGTCTGTACCTTTTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-'1-5,'1-3,4-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(12.2=28.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAACACGCCGCTCTGAG
R:
TGGAGTTGAGTGTCCCAGTCA
Band lengths:
176-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: