BtaEX0026526 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012405 | PEAR1
Description
Bos taurus platelet endothelial aggregation receptor 1 (PEAR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001101300]
Coordinates
chr3:13997415-14007210:-
Coord C1 exon
chr3:14007103-14007210
Coord A exon
chr3:13999354-13999484
Coord C2 exon
chr3:13997415-13997590
Length
131 bp
Sequences
Splice sites
3' ss Seq
GCTCTATTTCCTGTTTTCAGGCT
3' ss Score
9.1
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CCCGCAGTCGGGCTGGGGCTCCACGCAGGGACCCCTGCCCTGTCCTCCTCTGGGCCCACCTGGGCGTTCCCCATCCCAGGCAAACGGAGAAATAAGGTCGCGAGGCAG
Seq A exon
GCTCCATATCCTGAGCACCGGGACCCCCAGGATCCTCTGTGGATGCCCCTAGGCCCTGGGGCCTGAGGACCGTGACACCCTGTCCCTGGCTCACCTGAGTTTCTCAGGCCCCAGGATGCCATAGAGGCCTG
Seq C2 exon
AGACTTGCTCCTCCAGATCTGTGGCTACAGTGCCTCTCACCTGCTCTGCGCCTGGCCCTGTCACAGGGCCCTGCAATGTCACCACCCCTGCGGGCCCTCCTTCTCCTCGCCCTGGAGCTGGGGCTGGCTGCCACCCTCAACCCTAAGGACCCCAACACCTGCAGCTTCTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012405-'1-6,'1-3,4-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCTGTCCTCCTCTGG
R:
CTTTCCCAGAAGCTGCAGGTG
Band lengths:
250-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development