MmuALTD0010264-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000037315 | Phf16
Description
PHD finger protein 16 [Source:MGI Symbol;Acc:MGI:2148019]
Coordinates
chrX:20064424-20067018:+
Coord C1 exon
chrX:20064424-20064497
Coord A exon
NA
Coord C2 exon
chrX:20066828-20067018
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACCGTAGGT
5' ss Score
6.05
3' ss Seq
GCCAATGTTTGCTTTTCTAGGAT
3' ss Score
10.15
Exon sequences
Seq C1 exon
ATCAAGAAATAGAACATTACCAACACCCCAGAAGCCTTTCTTCTGCTCCCTGCCAGTAACTGACCTCCCTCACC
Seq A exon
NA
Seq C2 exon
GATTATATCTGAAAAAGTAAAGGAGATGCTTTTTGTCCGGCCCCGGAAATATATCCGTTGCTCCAGCCCAGAGTCTGCAGAACCTGGCTATATCAATACCCTGGAGCAAGCAGCATCTACATGCCGCTATGACCTAGATGACATGGATATCTTTTGGCTTCAGGAACTCAATGAAGACCTTGGAGAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037315-11-10,12-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF105134=EPL1=FE(14.7=100)
A:
NA
C2:
PF105134=EPL1=FE(42.4=100),PF107894=Phage_RpbA=PU(31.0=33.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCTCCCTGCCAGTAACT
R:
TGGGCTGGAGCAACGGATATA
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: