Special

MmuEX0034725 @ mm9

Exon Skipping

Gene
ENSMUSG00000037315 | Phf16
Description
PHD finger protein 16 [Source:MGI Symbol;Acc:MGI:2148019]
Coordinates
chrX:20056640-20067018:+
Coord C1 exon
chrX:20056640-20056797
Coord A exon
chrX:20064424-20064501
Coord C2 exon
chrX:20066828-20067018
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTCATTTAACTGCCACTCAGATC
3' ss Score
4.96
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
GTATTCCGAAAGGACCTCATCAGTGCCATGAAAATTCCTGACTCTCACCATGTTAATCCTGACAGCTATTACCTCTTTACTGACACATGGAAAGAAGAATGGGAAAAAGGAGTCCAAGTACCAGCCAATCCAGACTCTGTTCCAACGCCGTCTCTCAG
Seq A exon
ATCAAGAAATAGAACATTACCAACACCCCAGAAGCCTTTCTTCTGCTCCCTGCCAGTAACTGACCTCCCTCACCGTAG
Seq C2 exon
GATTATATCTGAAAAAGTAAAGGAGATGCTTTTTGTCCGGCCCCGGAAATATATCCGTTGCTCCAGCCCAGAGTCTGCAGAACCTGGCTATATCAATACCCTGGAGCAAGCAGCATCTACATGCCGCTATGACCTAGATGACATGGATATCTTTTGGCTTCAGGAACTCAATGAAGACCTTGGAGAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037315-'10-10,'10-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.340 A=0.222 C2=0.031
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF105134=EPL1=FE(34.4=100)

							
A:
PF105134=EPL1=FE(14.7=100)

							
C2:
PF105134=EPL1=FE(42.4=100),PF107894=Phage_RpbA=PU(31.0=33.8)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000111042f3632A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000111042





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000048529
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chrX:46880218-46880569 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chrX:90664629-90664699 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGGAGTCCAAGTACCAGCCAA

				
R: 
GTAGATGCTGCTTGCTCCAGG

				
Band lengths: 
171-249

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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