MmuEX0034725 @ mm10
Exon Skipping
Gene
ENSMUSG00000037315 | Jade3
Description
jade family PHD finger 3 [Source:MGI Symbol;Acc:MGI:2148019]
Coordinates
chrX:20479514-20489892:+
Coord C1 exon
chrX:20479514-20479671
Coord A exon
chrX:20487298-20487375
Coord C2 exon
chrX:20489702-20489892
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTCATTTAACTGCCACTCAGATC
3' ss Score
4.96
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
GTATTCCGAAAGGACCTCATCAGTGCCATGAAAATTCCTGACTCTCACCATGTTAATCCTGACAGCTATTACCTCTTTACTGACACATGGAAAGAAGAATGGGAAAAAGGAGTCCAAGTACCAGCCAATCCAGACTCTGTTCCAACGCCGTCTCTCAG
Seq A exon
ATCAAGAAATAGAACATTACCAACACCCCAGAAGCCTTTCTTCTGCTCCCTGCCAGTAACTGACCTCCCTCACCGTAG
Seq C2 exon
GATTATATCTGAAAAAGTAAAGGAGATGCTTTTTGTCCGGCCCCGGAAATATATCCGTTGCTCCAGCCCAGAGTCTGCAGAACCTGGCTATATCAATACCCTGGAGCAAGCAGCATCTACATGCCGCTATGACCTAGATGACATGGATATCTTTTGGCTTCAGGAACTCAATGAAGACCTTGGAGAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037315_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.332 A=0.222 C2=0.031
Domain overlap (PFAM):
C1:
PF105134=EPL1=FE(34.4=100)
A:
PF105134=EPL1=FE(14.7=100)
C2:
PF105134=EPL1=FE(38.8=100),PF107894=Phage_RpbA=PU(30.6=33.8)
Main Inclusion Isoform:
ENSMUST00000115384fB2980
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTCCAAGTACCAGCCAA
R:
GTAGATGCTGCTTGCTCCAGG
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types