RnoEX0045543 @ rn6
Exon Skipping
Gene
ENSRNOG00000039837 | Jade3
Description
jade family PHD finger 3 [Source:MGI Symbol;Acc:MGI:2148019]
Coordinates
chrX:1939377-1952111:-
Coord C1 exon
chrX:1951945-1952111
Coord A exon
chrX:1942121-1942198
Coord C2 exon
chrX:1939377-1939567
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTCATTTAACTGCCACTCAGATC
3' ss Score
4.96
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
TCTTCCCAGGTATTCCGAAAGGACCTCATCAGTGCCATGAAAATTCCTGACTCTCACCACATTAATCCTGACAGCTATTACCTCTTTACTGACACATGGAAAGAAGAATGGGAGAAAGGAGTCCAAGTACCAGCCAATCCAGACTCTGTTCCAACACCTTCTCTCAG
Seq A exon
ATCAAGAAATAGAACATTACCAACACCCCAGAAGCCTTTCTTCTGCTCCCTGCCAGTAACTGACCTCCCTCACCGTAG
Seq C2 exon
GATTATATCTGAAAAAGTAAAGGAGATTCTTTTTGTCCGGCCCCGGAAATATATCCGTTGCTCCAGCCCAGAGTCTGCAGAACCTGGCTATATCAATACCCTGGAGCTAGCAGCATCTACATGCCGCTATGACCTAGATGACATGGACATCTTCTGGCTTCAGGAACTCAATGAAGACCTTGGAGAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039837_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
PF105134=EPL1=PU(39.6=98.2)
A:
PF105134=EPL1=FE(15.8=100)
C2:
PF105134=EPL1=FE(46.0=100)
Main Inclusion Isoform:
ENSRNOT00000061140fB7116
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGTCCAAGTACCAGCCA
R:
TGCTGCTAGCTCCAGGGTATT
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]