MmuALTD0010264-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000037315 | Jade3
Description
jade family PHD finger 3 [Source:MGI Symbol;Acc:MGI:2148019]
Coordinates
chrX:20487298-20489892:+
Coord C1 exon
chrX:20487298-20487371
Coord A exon
NA
Coord C2 exon
chrX:20489702-20489892
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACCGTAGGT
5' ss Score
6.05
3' ss Seq
GCCAATGTTTGCTTTTCTAGGAT
3' ss Score
10.15
Exon sequences
Seq C1 exon
ATCAAGAAATAGAACATTACCAACACCCCAGAAGCCTTTCTTCTGCTCCCTGCCAGTAACTGACCTCCCTCACC
Seq A exon
NA
Seq C2 exon
GATTATATCTGAAAAAGTAAAGGAGATGCTTTTTGTCCGGCCCCGGAAATATATCCGTTGCTCCAGCCCAGAGTCTGCAGAACCTGGCTATATCAATACCCTGGAGCAAGCAGCATCTACATGCCGCTATGACCTAGATGACATGGATATCTTTTGGCTTCAGGAACTCAATGAAGACCTTGGAGAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037315-13-15,14-15,15-15-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF105134=EPL1=FE(14.7=100)
A:
NA
C2:
PF105134=EPL1=FE(38.8=100),PF107894=Phage_RpbA=PU(30.6=33.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSMUST00000115384fB2980
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCTCCCTGCCAGTAACT
R:
TGGGCTGGAGCAACGGATATA
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types