MmuALTD0010484-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000064247 | Plcxd1
Description
phosphatidylinositol-specific phospholipase C, X domain containing 1 [Source:MGI Symbol;Acc:MGI:2685422]
Coordinates
chr5:110101388-110101928:+
Coord C1 exon
chr5:110101388-110101420
Coord A exon
chr5:110101421-110101524
Coord C2 exon
chr5:110101800-110101928
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTCCATCCTCATCCTGCAGACC
3' ss Score
11.01
Exon sequences
Seq C1 exon
GGAGCCACGACACGATGACATACTGCCTGAACC
Seq A exon
GTAAGTCTCGGATCTCCCGTGCAAGTTCGTGGCTACTGCACCTGTTGGGCCGGGTCGTGCCATTCATCACCGGGCCCGTGGTGATGAAATGGTCGGTCACACAG
Seq C2 exon
ACCCTGGACGTGACGCAGCAGCTGGATGCGGGAGTGCGGTACCTGGACCTGCGGATCGCGCATGCGCCGGAGGGCTCTACACGGAACCTATGCTTCGTGCACATGATGTACACGAAGGCGCTGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064247-9-7,10-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(26.0=100)
A:
NA
C2:
PF0038814=PI-PLC-X=FE(24.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCACGACACGATGACAT
R:
CTCCACCAGCGCCTTCGT
Band lengths:
162-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types