MmuALTD0010484-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000064247 | Plcxd1
Description
phosphatidylinositol-specific phospholipase C, X domain containing 1 [Source:MGI Symbol;Acc:MGI:2685422]
Coordinates
chr5:110530407-110530947:+
Coord C1 exon
chr5:110530407-110530439
Coord A exon
chr5:110530440-110530543
Coord C2 exon
chr5:110530819-110530947
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTCCATCCTCATCCTGCAGACC
3' ss Score
11.01
Exon sequences
Seq C1 exon
GGAGCCACGACACGATGACATACTGCCTGAACC
Seq A exon
GTAAGTCTCGGATCTCCCGTGCAAGTTCGTGGCTACTGCACCTGTTGGGCCGGGTCGTGCCATTCATCACCGGGCCCGTGGTGATGAAATGGTCGGTCACACAG
Seq C2 exon
ACCCTGGACGTGACGCAGCAGCTGGATGCGGGAGTGCGGTACCTGGACCTGCGGATCGCGCATGCGCCGGAGGGCTCTACACGGAACCTATGCTTCGTGCACATGATGTACACGAAGGCGCTGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064247-7-7,8-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(26.0=100)
A:
NA
C2:
PF0038814=PI-PLC-X=FE(24.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCACGACACGATGACAT
R:
CTCCACCAGCGCCTTCGT
Band lengths:
162-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: