MmuALTD0010526-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000051344 | Plekhm3
Description
pleckstrin homology domain containing, family M, member 3 [Source:MGI Symbol;Acc:MGI:2443627]
Coordinates
chr1:64984271-65003369:-
Coord C1 exon
chr1:65003269-65003369
Coord A exon
chr1:65003189-65003268
Coord C2 exon
chr1:64984271-64985113
Length
80 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
TCTTGCTTGTTTTCTCCCAGGAA
3' ss Score
10.14
Exon sequences
Seq C1 exon
CCGGGCTGCCGCGGGGAAGCTTTTGGGCGTGGGACCGCGAGAAGCCGCTTGTAAACAGAGCCGGGCCGGGATGGTCGGCAGCTGGAGCGCAGTCGCTGGCG
Seq A exon
GTGAGGAGGGCGGGCTGCCCGGGTCGGGGTCCTGCCGGGGGTCGGCTGCAGGCCGCAGGGGAGAAGGGACCAGAGCCGCG
Seq C2 exon
GAAACTGAGGATTGGCCATACATTGCTTTGGCAAACACCGCCCGCCCTGCTGTCTTCCCTGAGATCTCTAAGAACAAGGCCCGTGCTCCTGTGCTTAGCCTTCTCTAGGCAGCCAGATGAAGATTGCTTCCTCTTGTTTTCACAGTTGTATTGCTGAACCACCTCTCTCTGTTGGCTGAGTGTTCATGACACCTCTTCCTGAAGCAGGTTAGAAGCTTGGACCCTGTGTCATGGAAGCTTTGGAAGTAGATGACATCAGCCCCGCCTTAGAGGTTACTGAGGATTTCTTTAGTACTTTTGACAGTAAGCTGGAAAAGGCTGTCCAACAAGCAGAGGTTTACGGGATCCAAGAAGTCCCTGAACTGGTGGGGCATGAGGTACTTGGTAACATAGCAGATAATGGTGCTTTAAGAAGCGTTGCTTCCCTGGGCAAGGGGACAATGATTTGGGACCACTGTAAGAGCAGGCTTTTAGAAACCAAAGCTCAAAATGTCTTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051344-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.215
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTAAACAGAGCCGGGCC
R:
GCAATCTTCATCTGGCTGCCT
Band lengths:
181-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: