MmuALTD0011131-1/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine, 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:135077081-135078141:-
Coord C1 exon
chr7:135078024-135078141
Coord A exon
NA
Coord C2 exon
chr7:135077081-135077346
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTCCGT
5' ss Score
3.18
3' ss Seq
ACTGGTTCCTATTCTCACAGGCT
3' ss Score
7.59
Exon sequences
Seq C1 exon
AAAGATTCCAGTTGGAGCCTTCTGTGCCGTGAGGAGGGGACCTGGTTCCTGGCAGGATACAGAACCCTCTCAGATGGTTGTCTCCGACCCCGAGCCTTTTCCCCAATGCAGACTCATG
Seq A exon
NA
Seq C2 exon
GCTGGGCTCTACAACAGTGCCCTACATTGAAGTATATCTTGGCCGGGCAGGGGTCAGCTCCCTCCCACAGGGCCACCAGGTATCTCGGTCTGTCGTCAGCATCCGTCTGCCCCGGCACTTAGGACTTAGACCCCCCCTGGCTCTACTGGAGCTGAACTCTCGGGTGGAGCCCTCCCCATCAGCTCTTCCCATCTGCCTACACCCAGGGGGTATTCCTTCAGGGGCCAGCTGCTGGGTTTTGGGCTGGAAGAACCCACAGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371-12-19,13-19,14-19-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=FE(44.5=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATGGTTGTCTCCGACCC
R:
AGGCAGATGGGAAGAGCTGAT
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: