Special

MmuALTD0011131-2/3 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine, 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:135077081-135078141:-
Coord C1 exon
chr7:135078024-135078141
Coord A exon
chr7:135077904-135078023
Coord C2 exon
chr7:135077081-135077346
Length
120 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
ACTGGTTCCTATTCTCACAGGCT
3' ss Score
7.59
Exon sequences
Seq C1 exon
AAAGATTCCAGTTGGAGCCTTCTGTGCCGTGAGGAGGGGACCTGGTTCCTGGCAGGATACAGAACCCTCTCAGATGGTTGTCTCCGACCCCGAGCCTTTTCCCCAATGCAGACTCATG
Seq A exon
GTCCGTGGATCCGTCATGTGACTCAGGGAGCTTACCTGGAGGACCAGCTAACCTGGGACTGGGGCCCTGAAGGGGAGGAGACCGAGAAACAGACTTGTCCCACACATACTGAGCACGGTG
Seq C2 exon
GCTGGGCTCTACAACAGTGCCCTACATTGAAGTATATCTTGGCCGGGCAGGGGTCAGCTCCCTCCCACAGGGCCACCAGGTATCTCGGTCTGTCGTCAGCATCCGTCTGCCCCGGCACTTAGGACTTAGACCCCCCCTGGCTCTACTGGAGCTGAACTCTCGGGTGGAGCCCTCCCCATCAGCTCTTCCCATCTGCCTACACCCAGGGGGTATTCCTTCAGGGGCCAGCTGCTGGGTTTTGGGCTGGAAGAACCCACAGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371-12-19,13-19,14-19-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.189 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0008921=Trypsin=FE(44.5=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000091565





     
                   









    
Main Skipping Isoform:
ENSMUSP00000120544





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000112659, ENSMUSP00000121532, ENSMUSP00000121706
          









    
Other Skipping Isoforms:
NA
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr16:31153042-31153043 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr25:27494378-27494379 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCAGATGGTTGTCTCCGACCC

				
R: 
AGGCAGATGGGAAGAGCTGAT

				
Band lengths: 
247-367

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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