MmuALTD0011137-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000052099 | Prss51
Description
protease, serine 51 [Source:MGI Symbol;Acc:MGI:1921465]
Coordinates
chr14:64094930-64096169:+
Coord C1 exon
chr14:64094930-64095010
Coord A exon
NA
Coord C2 exon
chr14:64095910-64096169
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGTTTGTATCCATCCCTCAGATT
3' ss Score
8.71
Exon sequences
Seq C1 exon
AATCAGTTCTGTGTGGCCACAGACCTGCCTTCCCAAACTCATCATGGCTGCCATTGCGGGAGCTGCTTGAGGTCCAGCATG
Seq A exon
NA
Seq C2 exon
ATTAGAACTGGTAGCAGTCAATGTCACTGTGGTCATGGGAATCAAGACTTTCAGTGACACCAACTTAGAGAGAAAACAAGTGCAGAAGATCATTGCTCACAGAGACTACAAACCGCCCGACCTTGACAGCGACCTCTGCCTGCTCCTACTTGCCACGCCAATCCAATTCAATAAAGACAAAATGCCCATCTGCCTGCCACAGAGGGAGAACTCCTGGGACCGGTGCTGGATGTCAGAGTGGGCATATACTCATGGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052099-3-4,4-4,5-4-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(1.1=28.6)
A:
NA
C2:
PF0008921=Trypsin=PU(79.6=97.4),PF150831=Colipase-like=WD(100=88.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCTGCCTTCCCAAACTC
R:
TCCCATGACCACAGTGACATTG
Band lengths:
102-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types