RnoALTD0015888-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000047637 | LOC100910401
Description
serine protease 55-like [Source:RGD Symbol;Acc:6498506]
Coordinates
chr15:47456994-47458068:+
Coord C1 exon
chr15:47456994-47457068
Coord A exon
NA
Coord C2 exon
chr15:47457809-47458068
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAAT
5' ss Score
3.54
3' ss Seq
CATTTGTATCCATCCCTCAGATT
3' ss Score
8.06
Exon sequences
Seq C1 exon
TTCTGTGTGGCCACAGACCTGCCTTCCCGAACTCATCGTGGCTGCCGTTGAGGGAGCTGCTTGAAGTCCAGAATG
Seq A exon
NA
Seq C2 exon
ATTAGAACTGGTAGCAGTGAACATCACTGTGGTCCTGGGAATCAAGACTTTCAGCGACATCAACTTGGAGAGAAAACTAGTACAGAAGATCATCACTCACAAAGACTACAAGCCACCCCACCTTGACAGCGACCTTTGCCTGCTCCTCCTTGCCACGCCAATCGAATTCAACAAAGTCAAAATGCCCATCTGCCTGCCACAGAGGGAGAGCACCTGGGACAGGTGCTGGATGGCAGAGTGGGCATACGCCCATGGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047637-5-5,6-5,7-5-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(0.5=14.3)
A:
NA
C2:
PF0008921=Trypsin=FE(47.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCCTTCCCGAACTCATC
R:
TGATTCCCAGGACCACAGTGA
Band lengths:
103-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]