MmuALTD0011137-3/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000052099 | Prss51
Description
protease, serine, 51 [Source:MGI Symbol;Acc:MGI:1921465]
Coordinates
chr14:64713835-64715006:+
Coord C1 exon
chr14:64713835-64713847
Coord A exon
chr14:64713848-64713959
Coord C2 exon
chr14:64714747-64715006
Length
112 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TGTTTGTATCCATCCCTCAGATT
3' ss Score
8.71
Exon sequences
Seq C1 exon
GAGGTCCAGCATG
Seq A exon
GTGAGTTCCCATGGCAAGTGAGTATCCAGATGCTTGGGAAACACCTGTGTGGAGGCTCCATCATCCACCGGTGGTGGGTTCTGACAGCAGCACACTGCTTCCCGAGAACCCT
Seq C2 exon
ATTAGAACTGGTAGCAGTCAATGTCACTGTGGTCATGGGAATCAAGACTTTCAGTGACACCAACTTAGAGAGAAAACAAGTGCAGAAGATCATTGCTCACAGAGACTACAAACCGCCCGACCTTGACAGCGACCTCTGCCTGCTCCTACTTGCCACGCCAATCCAATTCAATAAAGACAAAATGCCCATCTGCCTGCCACAGAGGGAGAACTCCTGGGACCGGTGCTGGATGTCAGAGTGGGCATATACTCATGGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052099-2-4,3-4,4-4-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(1.1=28.6)
A:
NA
C2:
PF0008921=Trypsin=PU(43.5=97.4),PF150831=Colipase-like=WD(100=86.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: