HsaALTD1047682-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000253649 | PRSS51
Description
protease, serine 51 [Source:HGNC Symbol;Acc:HGNC:37321]
Coordinates
chr8:10497712-10498808:-
Coord C1 exon
chr8:10498728-10498808
Coord A exon
chr8:10498616-10498727
Coord C2 exon
chr8:10497712-10497971
Length
112 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TTTTTATATTCGTTCTTTAGATT
3' ss Score
9.39
Exon sequences
Seq C1 exon
AAAACGTACAATGTGGCCACAGGCCTGCTTTTCCAAACTCGTCATGGTTACCATTTCATGAACGGCTTCAAGTCCAGAATG
Seq A exon
GTGAGTGCCCGTGGCAAGTGAGTATCCAGATGTCACGGAAACACCTCTGTGGAGGCTCAATCTTACATTGGTGGTGGGTTCTGACAGCCGCACACTGCTTCCGAAGAACCCT
Seq C2 exon
ATTAGACATGGCCGTGGTAAATGTCACTGTGGTCATGGGAACGAGAACATTCAGCAACATCCACTCGGAGAGAAAGCAAGTGCAGAAGGTCATTATTCACAAAGATTACAAACCGCCCCAGCTCGACAGTGACCTCTCTCTGCTTCTACTTGCCACACCAGTGCAATTCAGCAATTTCAAAATGCCTGTCTGCCTGCAGGAGGAGGAGAGGACCTGGGACTGGTGTTGGATGGCACAGTGGGTAACGACCAATGGGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000253649-8-4,9-4,10-4-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(53.7=67.7)
A:
NA
C2:
PF0008921=Trypsin=PD(8.5=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTACAATGTGGCCACAGG
R:
TTGCACTGGTGTGGCAAGTAG
Band lengths:
245-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains