MmuALTD0011247-3/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000015090 | Ptgds
Description
prostaglandin D2 synthase (brain) [Source:MGI Symbol;Acc:MGI:99261]
Coordinates
chr2:25466709-25467340:-
Coord C1 exon
chr2:25467330-25467340
Coord A exon
chr2:25467320-25467329
Coord C2 exon
chr2:25466709-25466831
Length
10 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCTCTTGTTCTTTTGTCCAGGTG
3' ss Score
10
Exon sequences
Seq C1 exon
TGCATTCAAGA
Seq A exon
GTAAACGCAG
Seq C2 exon
GTGACCTGGCCTCAGGACTCCTTTGCTCTGTCACTCTCAAGATCCCAGCCCTGGCTCCCCAAAGTACCTCTACACCCTCCAGCTTTGCCTTGACAAAGAAATAAAAGTCCAAAGCAAGTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015090-16-26,17-26,18-26,19-26-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PD(0.1=0.0)
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types