MmuALTD0011364-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000006673 | Qrich1
Description
glutamine-rich 1 [Source:MGI Symbol;Acc:MGI:1916482]
Coordinates
chr9:108419471-108431249:+
Coord C1 exon
chr9:108419471-108419571
Coord A exon
NA
Coord C2 exon
chr9:108430920-108431249
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
ACTATCCGTTTTAATTTTAGGAA
3' ss Score
10.56
Exon sequences
Seq C1 exon
ATCCTGTCGGTCTCGGAGCGGCGACGGCAGAACCGAGGCCCCGGGCGGTGAAGCGGGGCCGGCGGGTAGAACGGAGGCAGCGGCGGCGGTGACGTCGCCGG
Seq A exon
NA
Seq C2 exon
GAACCCTAAGGACTCTGCAATATGAATAATTCTCTAGAGAACACCATCTCATTTGAAGAGTACATCCGAGTAAAGGCGAGGTCTGTCCCGCAACACAGGATGAAGGAATTTCTGGACTCACTGGCTTCTAAGGGACCAGAAGCTCTTCAGGAGTTCCAGCAGACTGCCACCACCACCATGGTGTACCAGCAGGGTGGGAACTGCATTTATACAGACAGCACTGAAGTGGCTGGGTCTTTGCTTGAACTTGCTTGTCCAGTCACAACCAGTGTTCAACCACAAACTCAGCAAGAGCAGCAGATCCAGGTTCAGCAGCCACAGCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006673-0-4,1-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.204
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0061916=CARD=WD(100=47.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGAACGGAGGCAGCGG
R:
CGGATGTACTCTTCAAATGAGATGGT
Band lengths:
105-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: