MmuINT0130162 @ mm9
Intron Retention
Gene
ENSMUSG00000006673 | Qrich1
Description
glutamine-rich 1 [Source:MGI Symbol;Acc:MGI:1916482]
Coordinates
chr9:108419418-108421157:+
Coord C1 exon
chr9:108419418-108419571
Coord A exon
chr9:108419572-108421033
Coord C2 exon
chr9:108421034-108421157
Length
1462 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
ATATACTGTATTTTTTTAAGAAC
3' ss Score
5.88
Exon sequences
Seq C1 exon
ATTGGCCGTGAGGGCTGAATGTAAGATGGCGCCCAGGGAGCTGTGAGGAGAAAATCCTGTCGGTCTCGGAGCGGCGACGGCAGAACCGAGGCCCCGGGCGGTGAAGCGGGGCCGGCGGGTAGAACGGAGGCAGCGGCGGCGGTGACGTCGCCGG
Seq A exon
GTGAGGGCTCTGGTGAGGGCGGGGACGCAGCAAGGCTCTGGCTCGAAGGCGGCAGGCCCACCCTACACAACGGCGGGCGGGCGGGGGCGGGCGGGCCGCTGCCGCTGGGCCCAGGCGACCTCAGGGCGGCTTCAGAGCGGAGAACGTCCCTCGGCTCGCGAGCCTCCGCCCCACGGGTGGGGGAGGGGCGGGCCTGAGGGGCGGGTGGGCGCGGCGCACGGGGGCGCGCGGAGGCGCGCGCGCACGAGCGTGGCTTTTTTTTTTCTTTTTTTTTTTTTTCTCATTTTTCTGCGCGCGCGCGTGCGTTATCGTGCGCGCTGTGCGGTCCTCTCGTTGCGCGTAGCCGCCCGACGTGCGCGTCCCCGTTGGCTCTCAGCTGTGGCCCGTGGGCTAGAACGGCTTCCGGGGCGCGCGCCACCCCGCGACCCCCCGGTTTTGCGGCGCGCGCCCTGCTGTTGGTCGCTCACGCTGTCCGGAGTGCGCGCCGGACGCCCCTTCCAAGAGGAGGGCAGACGGGCGGGCGGGCGAGCGGCCTGGCGGACGACCGACCTGCCGACTGGGGAAGGTTGAGGGTTGGGCCCTTGTCCTCGTGACGTCCGGGGCAGCGGTGGCCTAGGTCTGCGGAGAAACATAGCGGCTTTGCGGTCTGGCTTGCGGCTCCGCTCCTCCGGGAGGCGGACAGGAGTGCTCGTACTAACTGAAGAATGCTGTTACTTAAGCGAGGCCCAAGGACTGGGTGGGTGCTTGGGGAGGGTGCTGCTCTGCTTGGGAAACCGAGTCCTGCTGGCCGGAGAGGGCATTGGGTCCCCATGGGTTTCCTCACCTTGTACTGGTGCTTTGTGCTGAGGAGAGAAGGTTACCATTACCAGGCCCCGCTTTTCTTCCATTAGAACCGATTCTTCCATAAGCGCAGTTGATACACGTCACCTCTGTGCGCTCCGGAAAGAGATCCTCCTCTGTATATGGTATCAAACTCTCGGAGCTCTAAAATTCCGCTTTAAATCCTCACTTAAATGCAGCCTCCCCCCCCCCTTTTTTTTTTCCACCTCCGCGTGGGTGGGAGGGGCTTGCCTTTCTGTTCTTGATAAGGGCTGTTTCTTAACCTTGATTAACTTGATCAATGCTTTGCCGGTTTTTTTCTTTGTAATTTCTAAAATGTCCAGCAAAAATTTCTAAAATCTGCCTGTCACTATAAAAACTATGTAACTGAAGTTCTTCTCAGCTTTTTTTTTTCTTTCCACATTTTGTTTCAGTGCTGTGATCTTCTATCTAGGAAATTCTAGGTTTGTGATGGAGAAATACACAGCTCTTTTTTTCTAAGACAAAACATCTGCTAGTTTATTTTTACAATTTTGTTACATTAAGCCTGAGGAAAAGCAAGCTAAAAGGATTTTTATTCCTTTTAGTAGCAACCAAACTTTGATAGTAATGACTTTTTTTTAATATACTGTATTTTTTTAAG
Seq C2 exon
AACAAAGTTAAAACTTAAAAAGAGGCTGAGGATGGAAGGAACTTCTTTGTTCTATCTTCTTCAGAATGTTAGAAGTCTTAAGAACTCAGGACAAGCAGCAGACATACATGCAACATGGTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006673-Qrich1:NM_001114119:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGGCTGAATGTAAGATGGC
R:
CAGTCACCATGTTGCATGTATGT
Band lengths:
270-1732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: