GgaINT1023102 @ galGal4
Intron Retention
Gene
ENSGALG00000006867 | QRICH1
Description
glutamine-rich 1 [Source:HGNC Symbol;Acc:HGNC:24713]
Coordinates
chr12:11587736-11591992:+
Coord C1 exon
chr12:11587736-11588156
Coord A exon
chr12:11588157-11591662
Coord C2 exon
chr12:11591663-11591992
Length
3506 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCACTTTCTCTTTCCTTAAGGAA
3' ss Score
9.67
Exon sequences
Seq C1 exon
GGGGGCTGCCCGGGGCCCGCGGGGAACAAAGGAGGGCCCCGGCGCCCCGCTGCAGGTGGAGGGAGGCCGGGCCGGGCCGGCGGTGGGGCCGGGCGCGGTGACGGGGCAGTTTGTGCCGGGGGACCTCTGGGCTCTGTCACCGCTGCTGCTGCCTTGTGCTGCTGCCTTGTTCTCAGCTCTGCCTTCCCCAGCCCGGTGCCGTGACAGGTGCGGAGGGAGGGGTCCCATCGCTGCCTTCCCCGGAGCCCGGCGATGTCTTCCTGATCATATTAAGTGGCAAAGCCTATTGAACATAAAATGGTTTTAATAAAGAAAAAGGAACCGGGGATGGAAAGGGCTTCTTTGTTCTGTCTTCTCCAGAACGTTACAAGTCTAAGAGCTCAGGACAAGAGCAGCAGAAATACATGCACCATGGTGACTG
Seq A exon
GTGAGTCCGGATCGTCCACATGCTGCGAGTCGTGTGTGTGTTCTCAGTAACCTCGGGCTGAGTTATGAACTAACCGTGTGTGCTCGCGATCGTCAGAGGGCTTTGCGCCCTTATTTCCTAGAAGATGGGGTAGTACTGAGAAGGGAGGGCTTACATCCACTTAGCAAAGGAAGCGTTCTGCTCGGGTGCTCTTTTGGCTTCAAAATGTGCTGCTGAGGCCTAAGGGAGAGTTTGCTGCTTCTAGCACGTGTCTGATGGTTCAAGGGAACGTATCCTGGTGAAAGTGGCAGCTGCAGCAGTGAGCTGCGTGCTGCAGAACCTTGGCCTGTTGAATGCGTTCAGAGGTTTTCTTCTGTTCAGAAACGTGGGTGAGTTTAGTTGTAACAGCTGTGGTTTGTGGTTACAGCATTACTTTCCTGGATCTTCACCTAGCCCTGGTACCTGTGCTGCTGCGTGTGGCTGTGAAGCACAGCCTGAGCCATCCGGTGCTCTTTGTTAAATGTATCCCCAAGCAGCCTTTGGGTAGATGGGAATGATTCTGTGTTACCTGTGGCGCCTTCAGCTCTTTCTGTTGGCTGGAGTTGAAAGGAAGGTCCTGTTGCTGTTTGGGAGCAGGAACGGTGCTTTCAGTACCATGTGGCATAATGGGGTTCTGCTCCATGCTTGGGACTTCACATGTTGCAGTGGCTTGCAGAAGCATTTCAGGGCTTTATTTGTTATTAACTCTTAGTGTAGTAATTTCACGCCAATAACAACAAAGGTTTTTCTGTGCTAGGTGAGAGCTTCCTTGTGACAGCTTGTGGCAGGGGAAGATTCACAAGACCAGAATGGTAGGCTGACTGTGGTACTGATTAGGATGGAGCAGCTGAGCAGGGTCAAGCATTTGTATGTAAGAAATTCATGCTATTTGTTCTGCTTCCTGGTGGTCAGAAGAGGTAGGTGGTGGTTTGGTGGTGAACCTCCTGCTGATCTTTGAGCCTGTTGTTTCTGTATCTGGGTTTCTGGTAGCTTCTGATCTCTGCCGTGGAGGAGCACGATGTGTGTATAAGCAGCTCCTGGGAGAGGGGTTGGAGTTCCAAAAGCGGTGTATGAGCCTTCATGCGGTGTAGTTCCATGACATAACTTTAGCTGTTTGGGGTTAAAGGTAACTACTGATGTCTCTTGACAAGATGAACAGAAAGTGAATAACTTTCTAAGACACAATTGATTCCCTGAGCCCTTTCAGCAGAGTAAGTGTGAATGCAGCAGTAAGGAGGAGGGCAGGACTTTGCCAGGGGTTGAGCCCTCCCAGTTCTGCAGCAGTTGGCTGTCACAGCAGCAGCACTGAAATCAAAGAGCAGCTGTTAGTGTTCACTGCTGGGCTCCTGGCATGGCATCCTTGAGGCTTCTTCCCCAGAAGTCTCCCCTCTGCAGGCTGTGTCTGCTAATGCACCTCTAGGTGGCTGTGCACTGTGATTGTGCTGTTCTAAAAGCTTCACCATGGTACTTAAGTAGAAAATGTGCAAGTTCTAAGTAGAAAATTGAGACAGGTTAATAACTGAAAATGTGTTTACCTGCTTGAGAGCGTCTACCAGAGCTTCTTACAGTTAGGTGCAAGATGAATTTGTGTGCTGGGTGTAGGTCCTGTCCGAGTCCCTGAAGATGTATTAGTAACTTTTAATCTCCCATTGGTGTCACCTTGGACATGCAGTCATTGGTCACCTGGAAAAAGATTGATGGAAGAAAGGTGCAAAGCACCGGCTGAGCCTCTTCAGTAGGACAAGCAGAACATCAAGCTTAGATGTGCTTAGCTTTTCCTTGGGTTCCTTCTCCTGGAAGAAACCTTGCTGAGTCAGCAACTGAGTGAGTAGTTTTAGTGGCTCTGTCACGCAAGCCTGAGAACTTGTCAGAGCAGAATCACTGACAGGTAGGAGTCTGTCAGTGTCTCTCTGTCTGTCTCTCTGTCCAGCTCTGGGCTCTACGGGAGCTTCTGTATGCTAATTTCTACAGGATTGTTGTATTAAGCAAGTGGACGCTGTTATCTTCTGCTTTGTATTGCTGAGGATCAATACGTGTTTTAAGCAGTCATTCCAGAAATGGTATATTCAGCAAGCTGCCTCGTGTTCCCTTACCTGTGATGTTCCTTCTTGCTCACATGGGCCTGGTCAAACATGCTAGCCGTGAACCTCCTCCATGTAAACAAAAACCGTGTGTGTTTAGGCTGCTGTCACGTAACAGTGAAGAGTGGTTAGAGATCACTGCGGCGCTTGCAGGTATTGGTGGGAACTGGGCTTGGACTTGGCAACGCGGTTACGCCACTGACAGCCTTGAACTCGCTCCCGTCTTCACACGGTTGTTGCAGTCTTCTGTTCAATCAAAAACCTCTGTCCTGGTTCTGCTTGGTTAAATCGCTGTGAAATGTTGCAAAGGGTGCTGCTTTTCATACTTTTTCTGTTAAGGACTGCAGTCAATGTGTGCGTACAGTGATGTTGTCCCTTTTTCTATCTCTCTGCCAGTAATACCAGATCTCTTCTAGTCTGAGTGCTGTGCTGTTTCTTGTCCTTTCACAGCCATCTCAGCAGCTGGTGGTGTTAGAGCTCAAATCTATTTACCCTTTATCAAGACTAATGAGTACCTTAGAAACAAGCAGTATGCTCACTGCAGAAACAATTTGTGGGTTTAAACAAGTTAAGTCAATAAGAGAAGAACGCTGCCGGTGTGTACCCTGGAGCTTCCTAATGTTCTCAGGTGTAGCCATCTTTTTTTTTTCCCTCCTTGCACTTGCTTTCCCAAATCATCTGACTGCTTCTATCTCTCTTCTGTCTTTACACGTTTCTCGTTAACCTCTTCCTGTATTAAAAAATAGCAGGAGCCAATGCTGCTGTTGGCTGCTTAATTTCCAGAGCTCTGCTTCTCCGTGTGTGTAGTTCTGTTTGAGGAATCTCTTGATTCCAGTGCTCTCCTCTCGCTTGCTGTGTTCAAATCGATAGGGCTGTACTAGTCCTAATAGCAGAGGGATGAATGCTGCGTCTGCTGCTCCTCTGTTCTGCTTCCTATTAGCTGCCTAGAGTAGAGCTGCATGGCCTGACAGAGCACGCTGCTCGGTTCTCCACCTCCATGGCTGTGAAGCAGAGCCATGTGTATTGATTTCTGAACTTCTCTTGCTAGCATTGCATGCTGCAAACGAATGAGGTCTGTGATTTGATTTGTTCTGTGATGAGATTCGCCTGGTGTGGGTGAAGTATAATTCTGGAAGGTGTTACATGGCAGTGAGCTCTTTGAAATAGGTGTCATGATTGTACCCGATGTCATTCAGACTTCCCTGAACTGCTGAGGGTTAATTTGAGAGGAGCGTAGCACTGCAAGGTGCCTCACAAAGCTAAAGCATCTGTCTCAGGGCATCTGGCCCTGCATGTTTGCTGGATTTCTTATGGTGCTCAGTATGAGAAATTAATTACTGGAGTTGGGAATGTCCTTGCACCAGAGGAGCACTGTAGTTAAGAGTTTTCACTTTCTCTTTCCTTAAG
Seq C2 exon
GAACCCTCAGGACCTTACAATATGAATAATTCTCTGGAGAACACCATTTCCTTTGAAGAATACATCCGCGTGAAGGCGCGAACGATCCCCCAGCACAGGATGAAGGAGTTCCTGGACTCCCTGGCTTCCAAGGGGCCGGAAGCTCTGCAGGAGTTCCAGCAGACGGCCACCACCACGATGGTGTACCAGCAGGGCGGCAACTGCATTTACACGGACAGCACAGAGGTGGCCGGGTCTTTGCTTGAACTTGCTTGCCCTGTGACAACCAGTGTCCAGCAGCAAACTCAGCAAGAGCAGCAGATACAGGTTCAGCAACCACAGCAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006867:ENSGALT00000011121:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.107
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0061916=CARD=WD(100=47.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]