RnoINT0121229 @ rn6
Intron Retention
Gene
ENSRNOG00000025071 | Qrich1
Description
glutamine-rich 1 [Source:RGD Symbol;Acc:1311095]
Coordinates
chr8:117308468-117318952:+
Coord C1 exon
chr8:117308468-117308527
Coord A exon
chr8:117308528-117318622
Coord C2 exon
chr8:117318623-117318952
Length
10095 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ACTATCCATTTTAATTTTAGGAA
3' ss Score
9.37
Exon sequences
Seq C1 exon
AATGTTAGAAGTCTTAAGAACTCAGGACAAGCAGCAGACATACATGCAACATGGTGACTG
Seq A exon
GTGAGTTAAAAATCATTCATCGCTGGAAGTATGTGTGCAGTCCGTTACCCCAACCCTTTGGTAATACTGACATTTTACAAATTTTGTCATTCATTCTTGGTGTTGTCTGCCAGATACTGCTACTTACTAGAAAACCGCTGATGAGGGAAACTGTATTTGTTCATCAGGCAACGGTCCTTAAAATCAAGTCAATGGAACATTCAGGATTAACATTGCAAAGCATCAACTAAGAACCTAAATGGCTTTCCAGAACAACAGAAACAATACAACAACAAAATCTGTCTGTTTGTTGACAATGTGTTTATAAACTTTTTATACCATTTAAGCTTTCTTATTCTGGATTGCCTTTTTTTTAAAAAAACAGAAACAGTGTTTCCATCAACTAGTATTATTTACATGGTAGATAACTTCTAGTTCTCTGGGTTTTATACTTCTCCAAGAACTTACAAAGTTCACTTCTGTTTACAAAAGCTTGTGTTAATGTTTCAAACAAAACCTCAAGGAACAGTTGAATTTTGTTGTGAATGTTGTTGTGAATTTGAGTTACTTGAAAAATCAAAAATGGGTTGGGGATTTAGCTCAGCGGTAGAGCGCTTGCCTAGCGAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCTGAAAAAAAGAAAAAAGAAAAAAAAAAAAACCCAACACAAATCAAAACCCAGTTAGGGACTTTGGGTGTGGCTGTTCTCTTTCATAGCAGCTTCAAAATCAAGGATGTCTACCTATAAACTTGCATGCTTTTAATCAGTAGTGGTTTGTACTTGGTGTGCCTTGCTTCTTACCTCTGTGCTTTTTAAATGGCCACGCTTTTTCTGTGAATATTTCTGAATTGGCCTCAGAATGAGGTGTGTTACGTGAACACCTGTTCTTTACTTTGCTCTCTTGGATTTAGTTCCAGGTTTAAGACCTCTCTTAGCTTCACTATTTTCCCTATAATACTGTACTGTAATTTCTGTTTTTAGCAGGTTTTCTGTCTGTCTGTTGTTTAGTGCAGAGGATTGAACGCAGAGTCTTGCACATGCTAAGCATGCGCTTTACACTAAACAACTGCTCTGGTTCTGGGTTGTGATTTGTCTTTTTAAACTGACTTGGTTGCATGAAGAAAAAGATGTAAATTTTTGCAATCTTCAAAGGGGGAAAGAAATGGTTCTTTACCCTCACTAAGGTTTAATAACTAAAGGTGGATGAGATGTGTTAGAAAGCTGGTTCTTTTTTTCTTTGAGACTACGTTTTAGAAATTCTGACCTGTTGCAGTAGAACATGGTCATGGAACTTCTGGTCATGCCTCTTGCCTTTACAGTCCCTGGTGTTGGGATTATAGGTGTGCTGCCCACAGATCCATTCTGTGTGGGTTGCAGATCAAACCCCGAGGTTTGTGTATGCTATACAAGCACACTGTAACACCCGCCTTAAAGTTGTCAAAATACTTACACACTGTTTACAGTTCGGATTAGTGTAACTGCCTCTAAGAAATAGAATGTCATCAACCCCTTCCCTCTCATTAGTGTTTCAGTTCTTGGAGACAAACTTATTCTGATTCGAATAACAATCTCAATAATCTCAATCTCATATTCTCTCTCTCTCTCTCTCTCTCATGTCTATGGGTGTTTTATGTGCATATATGTCTGTACACCATTTCATGCAATGTCTTTAAAACTAGAAGAGATTAGGGTGTTAGATCCCTTGGGACTGGAGTTAGAGCCTGTTGTGTGCTGTTATTTGGGTATCAAACTCAGGGTCTCTTGAAGAGCAGCCAGTGTGCGAACTACTGCTGAACAATCTCTTCAGCTGGATAGACTTGTCTTTGTATTTAACCACCTTTGTATCTCTAAGGCATAGCTTTTGTTTTGAATTCCATGTAAATACACATTATGATTATTGTTTTCGAGACAGGATCTTAATATGTTACGTCTGGCTTTTCTGGAACTCACCTTGTAGACCAGGCTAGCCTTGAACTCATAGGCTATCTCCCTGCCTATGCCTCCCGAGCTTAGTTTATTATTGTGTTTCCCTGTTTTGTGCAGCTGTAGTAGTTGATGTTCATTTCTGTATTGTCTTGTGGATATTTCATTAAGTTTTCTATCTTACATTGGTAAACTTCTAAATTGCTTCGTTTATACATATCAGTGCTACTGTGAATATTTGCATATATTTGGATGTCATATACGTTATTTTCAACTTCACAAGCCAGTGTAAGTGGTTGTATTAATTTATAACCCATTAGTATTTAATTTTTTTTTTTTTTTTGGTTCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAAAAAAAAAAAATTTACTTATTTTATGTATGTTAGTACACTGCTGTCCTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGGGAGCCACCATATGGTTGCTGGGAATTGAACTCAGGACCTCTCGAAAAGCAGTCGGTGCTCTTAACTGCTGAGCCGTGTCTCCAGGCATTGATTTTAAATTCTTGGTTGAAAGTGCGTGTTATTTAAAAATAGAAACATGATGGAGTGGCCCAGGAGAGAGTTTCTTTGACAGACTTTATAATGGGTTAGCATTTGTAAGAATAGAACTAAGTTTTCCACTCTGCGTCTTTGGCAGTGACACCTTACTTTTTAAGAGGTTTGAGGCTCAAAAGAGGCAAGACTGAGGTGACTCAGACTATAGTCTCTTAGAAGTTTAAAACCGGGGTTGGGGATTTAGCTCAGTGGTAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAGAAAAAAGGAAAAAAAAAAAGTAGTTTAAAGCCTCAAAAAAAACTTGGCTAGCCCAAAAGTAGTGAGTTAATTGGTTGCAGTTAGTCACAGACTGAACTTGTCATACCCTCTCTTAGTGCTGTACTTGACTAGTCAAACAAACAACAGAAGGCAGAAATGAATGACTCTAGGTGAGTACTGGAGTCATCTCTTAATACCTAAAGAGAAGAAGAAAGGAATTAGTGAAAGTGCCCTTGGAGATACTTTTTGAATAATCTTTTCCATGAATCTCATTGTGTTCTGGTCACAACATAATAGCTTGTATATTTAACTTGGTCAGGCATTGTGCTAGTACTAGCACTAGTGAACCTATCAGTCTGGTAACTAGCACATGACAGTATTGTGGGTCTGCTGACTGGAGCGTTTGTCTTCTACAGTGTCCTGCAAAGCAACTAGACTTGAGGTCTTTAGAAGCAAATGCTTGTTTAAGGACTACCTACTATGAACTAACTCTACTGTTTTCTTGTTTTCTATTGTTAATTTCATCTGACTTCCAGGTACTGGGGCTACTCAGCCTATTCTCATAGCTTCTGGATTTTAGAAGTCTTAACTTCTTTACTGCTTCTCACCGGGTCTTTAGCTTAGACTCTAAGGCACTAATTAGGAGTCTTTTGTCTCTGAGTGTTTGTCTATTGTGGAGGCTCAGCCTTTGTGTCTTGTGTGCAGCATCTTAAAGAATTTAACACCATTATTATGTAAATTTTTGGGACTGGATGATTTTGTTAAGAGTTGAAGATTTTTAGGGCAAAGCATATTACAAAAGAATTGTTTGCCCTACTGTTGTAATATAACCATAAAATAGAAAAGGATGACTTATTAAGTATCTTTCTGTCAATATAATTTATGGAAAATACAGTACAGTATTATACAAAAATTTATCAGCTAATACTGTTCTGATTTTTTTCCTTTTTTTCCCTCTTAACTAATGATACTAGGACATGTAAAATTGTATGAGGGTCCCCGTGTGCCCCCCCCCCCAAGCTGGGGACTGAACCCAGGGCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGTGCAAGGCCCTGGGTTCGGTCCTCAGCTCTGAAAAAAAGAAAAAAGAAAAAAAAAAAACTTGCTCTATATTATAGGTTAACATGTTTTCCAAAAACAATTATGGTTATATAGATGGCAGTGGGATTTTATTGAAAAGTTAGTAGGGATTTTGTTTGTTTGTTTGTTTTTTTGTGGTTTTTTAAGACAGGCTCTCTCTGTGTAGACTTAGCTATCCTGGAACTTACTGTATAGATCAGGCTGACTTTGAACTCAGAGAGATAAAGTTTCTACCTCTTGAGCACTGAGATTAAAGGTGGGCACCACTAAGCCTGGCTCACAGTATTGCTTTAAAATACACTTGGAAGCTAAGCCTATGTGTAGGGACTTGGATTTGATTTCCAGTCCGCCAGAACTCCACAGTCGGTGATAGCTTGTCTCAAAGGAAGTGTGTGTGTGAGAGTGTGTGTGTGTGTGTGTTTCTGTCTGCCTGTCTCAAATGAACTCTTGGGAGAGTTTGCCATATATGTGATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTATATGTGTATATGTGTATGTATATATGTATATATGTGTGTATATATGTATGTGTATATATATATATTTTTTTCAAAACAGCATTTGTTTGTCAGGTTGAAGCTAGCTTGATGAACTTGTGTTTGTGGGATGTTGTAGTGGGATGGGTAGTTTTGAAGTTTGCAGTGGCCTGGAAACAGAGTCTCTATAGGCTACCAGCATATCCAGTGTGTTGTTTTCTTCTCTTTGTGGAAATAACTGTGTTTCTATAATATAAAGGTCTGTTGTGTTGTTATTTTTCTTTTTAAATCATGGGCCAGGTGTGATGCTATACGCCTTTAGTCCCAACACGTGGAAGACAGAGACAGGTGGATCTCCAGCCTGCTTTACATAGTGAGCTCCATGCCAGCTAAGGCTACAGAGTGAGACTCTCAAAAGGGTTTTTCTGTTTCTATATATCTACATGCAGGTGCCCACAAAAGGCAGAAGAGGTCATTGGGTCCCTTGGAACTGGAGTTAAGTTGGTTCCAGCACCTGACAGGTTCTGTTAACTGCTGTGCCATCTCTCCAGTCCCATTGTTACTGTGCTTATGTGGAGAGAAGTATTCACAATGTATGCATTATTTTAAAGAATTGTCATTGGATCATTCTGTTTGAAAGCACCCAAATATAATTAGTATACTATACTTACATGTCGTCCCACAGAAATGTCAGTGAATTAATAGCCAGAAGACTATTTGGTTTTCTTTGGTTTCACTTATTGACTCTGGGTATGTAGTTCTAGTCTTCCCAAGAAGTACACTATTTGAAAAAAATAGTACCCTTATTTTTCTTGAGTTACAGATGTGATAGGAAGAATTTTTTTTAAAGATTTGTATATTTAATTTACATATGTGAGTGCTCTGTTTGCATATACACCTGTATTACCAAAAGAGGTCATTACAGATGGTTGTGAGCCACCTTGTGGTTGCTAGGAACTGAACTCAGGACCTCTGAAAAAACAGCTAATGCTCGTAACCACTGAGCCATCTCTCCAGCCCTAAGTTTTATTCCTATGCTAGGTGGTACAGTGGCACACACTTGATGTCCCAAGTACATCTCAGCACTTGGGAGGCAGAGGAAGGTAGATCGCTTGAGTGCCAGCCTGGTCCACAGAGCATGTTCCAGGACAGCCAGGACTATCTTGTCTCGGAAAAACCATTTTTTTTTTTTTATTCAACTGTGTATGTGTCTGCAAGTGTCATGGACTCTCCTGAATCCAGAGATATAAGCTGCCTCTCATGGGTGCTAAGATTTGAACCTGTACCCTCTGTAAGAGCAGCAAATGCTCTAAATTACTAGGGCATCTCTCCAAGTCCTGGAAGAAGGAATCGTAATTCTTAATTCTTGTTAAAAGTATATAAGAAGCACCTTCCATATGTGAACTATTTAGAGCTGAATGGGACACAGTTTTACAGTTTTGTCTGCCAAGAGTTTTAGAGTCAGATGGAAGACAGTAGATGGTTACCCACAAATGCGACTGTAGATATAGAGTAGAACATCTCATCAGTGAGGGAGAGGAATGACTCAGAAGAAAAAAATTAAGTTTCCAGACATCTGAGACCAACTAAGAGCCCTTTTTGGCAAGAAGCTTCCCTTGGCTTGTTACTCTATTACCTGTGACTGCTTTTGCCCTTGGGTTTGTGCTGCCTAAAAGAGGGTAGTGCAAAGACAGTGTTGACAGACAGCTTAGTAGCTACAGGTCACTGTGCTTTTGTTGTCCTGTCTCTAAACTTTTTTACATTTATTACTTACTTATTTTTGTGTGTGGATACATGCCAGGACACGTGTGTGGAGGTCAGGGGACAATTGTGGAAGTTGGTTCCTTTCTTCCATCATATATGTCATGGGAATTCAACTCAGATCATGAACAATACAGGCATCTTTACCCTTGAGCTATTTTGTTGGTCCCTTTTTTCTGAAAGTCATCAGTTGCTTTCATTGGTTTTGCAGATGACCGTGAACTTCTAGTTCTCTGGACTTGCTAAGTGTTGAAGTTACAGATCTGCAACATCTTGTCTTTTATGTAATGTTGGGGACAAAACCCAGGACTTTGTATGGGCTAGGCAAGCATGTACTCTACCAACAGAGCTATGTCCCCAACTCTTATTTTGTTTTTTTGAGGCAAGATTAAAGAATGTAGCCCAACCTGGCCTTAAACTCACGATCTTCTTGATTAGGCCTCATGAGGAATTACTGGATTGTGGTCTTCCTGGGCCCAGGTCATTTTTGTTTAAGATACTTGATTAAAAAGTGCAAAATTGATTTCCGGATTTTGGTACTTATTTAAGGAACTAGTCAATTCCTTCCAATTTGTTTTAGATTTATTTATTTTTATTTACGTGGATATGGGTGTTTTGTACCCATGCCTGTGGGTACCATGTGCAAGCCTTGTGCTACAAAGGCCAGAAGAGGTTGGCAGATTCCTGGAATTGGAGTTTAGGGGCTTGGGAGCTGCCATGTGGGTACTGGGAATACCCCAGTCTCTGTAAGAGCAGCCAAGGTTCTTAACTACTGAGCCATCTCTCCAACCCCATTTCTAGTTATTTTAATAAAATTAGTCAATATTATATGGTACTTTTTCTCAAATATTTTTCCGAGCACTGTAAGTGATATTTTATTCCTGTTTAATAGAAGGAAAAATATTGAAGTTAACTAGCTTCTAACACTCGATGTCAGAGTGCAATTTGAAACAAAGCGGTATGGTTCCAGAGAGTATGTTTTAGTCATGCTGCAAAAGAATGTGAGCAATGTATGGAAAATGAGATCATTACTTTTCCTTTTTCATCTTTGCCTTTTAAATATTTTATTTATTTATTATATATTATGATTACACTGTCGCTATCTTCAGACACACCAGAAGAGGGCATCAGACTCGTTTCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTGGGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTCATCTTTGCCTTTTAAAAATGATCTTTTGCTCTTTTTTTTTTAGTGATTTGTAGATGTGGCATGTAGTTCTCACTGGTTTCTGACTTGAGATTCTCTTGCCTCAGCCTGCCAAGTACTGGGATTACATGTATTTAGGGAGCAAGAAGTACACCACTAAGTCCAGGAGATTTTTGGTGTTTCTGATGGGAGGGAAAGAATATGCTCCTTGTCTCTTGGGTCTTGCTAGATGGTATACATAAACAATCTTACTATAGTAGTATTTAGTATTGGAAATAAAATGTCAGTAAGGGCCAGGTGACCAACCAAAGTTATGTAGTAAGACCCTGTTTCAAAAAAACCCAACCAAACAAAAACATGTCACTAAGTAGGAATCTGATCATAACTCCCTCCCCTTGTTTGATATTCTTTCTGTGATATTATAAGGTTATTTATTTATTTATTTGGAGTCAGGGACTCACTCTGTAACTCTGACTGGCTTGTAATTTACTATATAGATAAATCAGGTTGGCCTCAAACCTTTAGATTTCCACCTGCATCTGCCTTTTCGTCTTCTTCTTTTTTTTAAAGATTTATTTATAAATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTATAGATGGTTGTGAGCCACCATATGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTTAGTATTCTTAACTGCTGAGCCATCTCTCCAGCCCCTGCATCTGCCTCTTAAGTGCTTCATATAAAGGTGTGTGCAAACAGGAATAGGAATGGTCTTACATGCAACATTAACTATCTAATGCTTGACTTCATAGAGAGGATGGAATTGGCCCAATGCTGGATGGAGGCTATGACTTCAGCCTATTCTGTCTGGTACTTGAATGTGCTTGACTTTTGTTTTAGTATGATAGTTTGGTTTAAGAAATGTTGAAGGCTTGGGCAGTGGTGGCACATGCCTTTTATCCCAGCACTCAGGAGGCAAAAGGGGATGGATCTCTCTGAATTCAAAGCCAGCCTGGTCTGCACAGTGAGTTTCATTCAGGACAGCCAGAGCTGTTACTAAGGGCTGTTCCCTGACTAGGGAAACAAAACAAGCAAAATGTTGGATGATGGGTATTGTACTGGCTTGCACCTGTTCTCAGGAGGCCGGAGAAGGAGGAGGAGAATTTCCTTAAGTTCAAAGCCAGCCTGGGCTACATGGAATTCTAGCACGGGCTGGGCAAAAGGGCTGGTGAAGTATTAACAACAGCAAATGAGAGGCACTTGTGTAAGCCTATGAGTTTTATCCCTGGAATCTGTGTAAATGTGGAAGAAAGGAACAAACTATACAAAGTTGTCTTCTGCCTCGGCACACTTGTCATGTCATGGCATGTGTGCCGTATATTATCTCGTACACACTCTAAAGATTAAAACAAAATACCTCATAGAGATGGGCACCAACACTCTCAAGGCAGACGCAAGTGAATCTCTGTGGGGTTAAGGCCAGCGTGGTCAACATAGCAAGTTTCAGGCCATCCAAGGGTTCATAGTAATAAAATAACCTTATTTTAAAAAACAGAAAACACCACAGTTTATTTTGGGGAAAAATAAAAATATAATAAAATATATATAATATATATGTATACATATATATTACATATATTACACGCACATCTGTATTTTTTCCATTCTCATTGCCAGAGTAATTGTGTCTGTATTTCAAGATTTCCAGATATACAAATAGTAGGGTTGGTAAGGTGGCTCAGTAGGTAAAGCCACCTGCTGCCAAGCCTGATGACCTGAATTTGATCCCTGAGACCCACATAGTGGAAAGAGAACTAACTCAAGTGGGTTGTCCTCTGACCTCTACGAATTCCTTGGCATGTGCATGTCTACACCCTGATAATTAATGTAAAAAATATAAAAATCGGTAAGCTAACAGTAGTAGAGTGTTGACTATCCATTTTAATTTTAG
Seq C2 exon
GAACCCTAAGGACTCTGCAATATGAATAATTCTCTAGAGAACACCATCTCATTTGAAGAGTACATCCGAGTAAAGGCGAGGTCTGTCCCGCAACACAGGATGAAGGAATTTCTGGACTCGCTGGCTTCTAAGGGACCAGAAGCTCTTCAGGAGTTCCAGCAGTCTGCCACCACCACCATGGTGTACCAGCAGGGTGGGAACTGCATTTATACAGACAGCACTGAAGTGGCTGGGTCTTTGCTTGAACTTGCTTGTCCAGTCACAACCAGTGTTCAACCACAAACTCAGCAAGAGCAGCAGATCCAGGTTCAGCAGCCACAGCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025071:ENSRNOT00000064571:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.194
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0061916=CARD=WD(100=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]