RnoEX0071929 @ rn6
Exon Skipping
Gene
ENSRNOG00000025071 | Qrich1
Description
glutamine-rich 1 [Source:RGD Symbol;Acc:1311095]
Coordinates
chr8:117308468-117318952:+
Coord C1 exon
chr8:117308468-117308527
Coord A exon
chr8:117314101-117314244
Coord C2 exon
chr8:117318623-117318952
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTCTATATATCTACATGCAGGTG
3' ss Score
8.35
5' ss Seq
AATGTATGC
5' ss Score
3.91
Exon sequences
Seq C1 exon
AATGTTAGAAGTCTTAAGAACTCAGGACAAGCAGCAGACATACATGCAACATGGTGACTG
Seq A exon
GTGCCCACAAAAGGCAGAAGAGGTCATTGGGTCCCTTGGAACTGGAGTTAAGTTGGTTCCAGCACCTGACAGGTTCTGTTAACTGCTGTGCCATCTCTCCAGTCCCATTGTTACTGTGCTTATGTGGAGAGAAGTATTCACAAT
Seq C2 exon
GAACCCTAAGGACTCTGCAATATGAATAATTCTCTAGAGAACACCATCTCATTTGAAGAGTACATCCGAGTAAAGGCGAGGTCTGTCCCGCAACACAGGATGAAGGAATTTCTGGACTCGCTGGCTTCTAAGGGACCAGAAGCTCTTCAGGAGTTCCAGCAGTCTGCCACCACCACCATGGTGTACCAGCAGGGTGGGAACTGCATTTATACAGACAGCACTGAAGTGGCTGGGTCTTTGCTTGAACTTGCTTGTCCAGTCACAACCAGTGTTCAACCACAAACTCAGCAAGAGCAGCAGATCCAGGTTCAGCAGCCACAGCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025071_MULTIEX1-2/2=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.194
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0061916=CARD=WD(100=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGACATACATGCAACATGGT
R:
GCCACTTCAGTGCTGTCTGTA
Band lengths:
258-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]