RnoALTD0024282-2/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000025071 | Qrich1
Description
glutamine-rich 1 [Source:RGD Symbol;Acc:1311095]
Coordinates
chr8:117306867-117318952:+
Coord C1 exon
chr8:117306867-117306967
Coord A exon
chr8:117306968-117307003
Coord C2 exon
chr8:117318623-117318952
Length
36 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
ACTATCCATTTTAATTTTAGGAA
3' ss Score
9.37
Exon sequences
Seq C1 exon
AATGTAAGATGGCGCCCAGGGAGCTGTGAGGAGAAAATCCTGTCGGTCTTGGAGCAGCGGTGGCAGAACCGAGGCCCCAGGCGGTGAAGCGGGGCCGGAGG
Seq A exon
GTAGAGTGGAGGCAGCGGCGGCGGTGACGTCGCCGG
Seq C2 exon
GAACCCTAAGGACTCTGCAATATGAATAATTCTCTAGAGAACACCATCTCATTTGAAGAGTACATCCGAGTAAAGGCGAGGTCTGTCCCGCAACACAGGATGAAGGAATTTCTGGACTCGCTGGCTTCTAAGGGACCAGAAGCTCTTCAGGAGTTCCAGCAGTCTGCCACCACCACCATGGTGTACCAGCAGGGTGGGAACTGCATTTATACAGACAGCACTGAAGTGGCTGGGTCTTTGCTTGAACTTGCTTGTCCAGTCACAACCAGTGTTCAACCACAAACTCAGCAAGAGCAGCAGATCCAGGTTCAGCAGCCACAGCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025071-1-6,2-6,3-6,4-6-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.194
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0061916=CARD=WD(100=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACCGAGGCCCCAGG
R:
ACCTCGCCTTTACTCGGATGT
Band lengths:
120-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]