RnoINT0121228 @ rn6
Intron Retention
Gene
ENSRNOG00000025071 | Qrich1
Description
glutamine-rich 1 [Source:RGD Symbol;Acc:1311095]
Coordinates
chr8:117307339-117308527:+
Coord C1 exon
chr8:117307339-117307688
Coord A exon
chr8:117307689-117308467
Coord C2 exon
chr8:117308468-117308527
Length
779 bp
Sequences
Splice sites
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
3' ss Seq
CTTTGTTCTATCTTCTTCAGAAT
3' ss Score
10.32
Exon sequences
Seq C1 exon
AGCTGTGGCCCGTGGGCTAGAACGGCTTCCGGGGCGCGCGCTTCCCCGCGACCCCCAGTTTTGTGGCGCGCGCCCTGCTGTTGGTTTGGTTGCTCGCGCTGTCCGGAGTACGCGCAGGACGCCCCTTCCGAGAGGAGGGTCGGCGGCCTGGCTGACGACCGGCTTGCTGAGTGGGGAAGGTTGAGGGTTGGGCCCTTGCCCTCGTGACGTCCCGGGCAGCGGTGGCCTAGGTCTGCGGAGAAACATAGCGGCTTTGCGGTCTGGCTTGCGGCTCCGCTCCTCCGTGAGGCGGACAGGATTGCTTGTACTAACCGAAGAATGCTGTTACTTAAGCGAGGCCCATGTACTGG
Seq A exon
GTGGGTGCTTGGGGAGGGTGCTACTCTGCTTGGGAAACCGAGTCCTATTGGCCCGAGAGGGCATTGGGTCCCCAATGGGTTTCCTCACCTTGTACTGGTGCATTGTGCCGAGGAGAGAAGGTTAACATTGCAAGGCCCCGCTTTTCTTCCATTAGAAACCAATTCCTCCATAAGCGCAGTTGATACACGTCACCTCTGTGCGCTCCGGAAAGAGATCCTCCTATGTGTATGGTATCAAACCCTCCAAGCTCTAAAATTCCGCTTTAAATCCTGACTTAAATGCAGCCTTTTTTTTTTTTTTGTCACCCCCGCGTGGGTGGGAGGGGCTTGCTTTTTCTGTTCTGGATAAGGGCTGGTTCTTAACCTTGATTAACTTGATCAGTGCTTTGCCTTTTTTTTCTTTGTAAATTCTGAAATATCCAACAGAAAATTCTAAAATATGCCTGTGTCACTATAAAATCTATGTAACTGAAGTCCTTCTCAGCATTTTTTTAAAAAACATTTTGATCCAGTGCTGTGATCTGCTGTCTAGGAAATTCTAGGTTTGTGATGGAGAATACGCAGCTCTTTTTTTCTAAGACAAAACATCTGCTAGTTTATTTTACAGTTTTCTTACATTAAAGTTGAGAGAAAGCAAGCTAAAAGGATTGTTGCTTTTAGTAGCAGTCAAATTGGGTAGTAATGACTTTTTAAAAATATACTGTATTTTTTTAAGAACAAAGTTAAAACTTAAAAAGAGGCTGAGGATGGAAGGAACTTCTTTGTTCTATCTTCTTCAG
Seq C2 exon
AATGTTAGAAGTCTTAAGAACTCAGGACAAGCAGCAGACATACATGCAACATGGTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025071:ENSRNOT00000064571:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACCCCCAGTTTTGTGG
R:
GTCTGCTGCTTGTCCTGAGTT
Band lengths:
342-1121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]