RnoEX0071922 @ rn6
Exon Skipping
Gene
ENSRNOG00000025071 | Qrich1
Description
glutamine-rich 1 [Source:RGD Symbol;Acc:1311095]
Coordinates
chr8:117306903-117318952:+
Coord C1 exon
chr8:117306903-117307003
Coord A exon
chr8:117308468-117308527
Coord C2 exon
chr8:117318623-117318952
Length
60 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTCTATCTTCTTCAGAAT
3' ss Score
10.32
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATCCTGTCGGTCTTGGAGCAGCGGTGGCAGAACCGAGGCCCCAGGCGGTGAAGCGGGGCCGGAGGGTAGAGTGGAGGCAGCGGCGGCGGTGACGTCGCCGG
Seq A exon
AATGTTAGAAGTCTTAAGAACTCAGGACAAGCAGCAGACATACATGCAACATGGTGACTG
Seq C2 exon
GAACCCTAAGGACTCTGCAATATGAATAATTCTCTAGAGAACACCATCTCATTTGAAGAGTACATCCGAGTAAAGGCGAGGTCTGTCCCGCAACACAGGATGAAGGAATTTCTGGACTCGCTGGCTTCTAAGGGACCAGAAGCTCTTCAGGAGTTCCAGCAGTCTGCCACCACCACCATGGTGTACCAGCAGGGTGGGAACTGCATTTATACAGACAGCACTGAAGTGGCTGGGTCTTTGCTTGAACTTGCTTGTCCAGTCACAACCAGTGTTCAACCACAAACTCAGCAAGAGCAGCAGATCCAGGTTCAGCAGCCACAGCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025071-'2-6,'2-1,9-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.194
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0061916=CARD=WD(100=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGTAGAGTGGAGGCAGC
R:
TTCCTTCATCCTGTGTTGCGG
Band lengths:
148-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]