HsaEX0051477 @ hg19
Exon Skipping
Gene
ENSG00000198218 | QRICH1
Description
glutamine-rich 1 [Source:HGNC Symbol;Acc:24713]
Coordinates
chr3:49114142-49131796:-
Coord C1 exon
chr3:49131345-49131796
Coord A exon
chr3:49129830-49129889
Coord C2 exon
chr3:49114142-49114471
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTCTATCTTCTTCAGAAT
3' ss Score
10.36
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AAAGGAGGCTCTGGCGGGCGACGGAAGGTGGGTCCAAAGAGCTAGCTTGGAGCCCTAGCCTTCCGAGACTCCACTACTAGGCCAAGCCACGGCCCTAGCTCCGCCCCACATGGAGAGGCGTCCATGGGCGGAGCGAGCCGCTCCATACCCTAGGATCCACTATCCGCTCTAGCGGCCAGAAGCGCGGCCACCTTCCCCTGCTGAAGCGTTCACTTTAATTTTGGCCGGTAGGCAGTCCCAGATCTCGCGGGATCCGACGCCCCGATTATCGCGAGAGGAGCAATCGGCTCCTATTGGCTGTGAGGGTTGAATGTAAGATGGCGCCCAGGGAGCTGTGAGGAGAAAACCCTGTCGGTCTTGGAGCGACGACGGCAGAACCAGGGTCCCTGGCGGTGCGGCGGGGCCGGCGGGTGCAGCGGAGGCGGCGGCGGCGGCGGCAGTGACGTCGCCGG
Seq A exon
AATATTAGAAGTCTTAAGAACTCAGGACAAGCAGCAGAAATACATGCAACATGGTGACTG
Seq C2 exon
GAACCCTAAGGACTCTGCAATATGAATAATTCCCTAGAGAACACCATCTCCTTTGAAGAGTACATCCGAGTAAAGGCACGGTCTGTCCCGCAACACAGGATGAAGGAATTTCTGGACTCACTGGCCTCTAAGGGGCCAGAAGCCCTTCAGGAGTTCCAGCAGACAGCCACCACTACCATGGTGTACCAACAGGGTGGGAACTGCATATACACAGACAGCACTGAAGTGGCTGGGTCTTTGCTTGAACTTGCCTGTCCAGTCACCACCAGTGTTCAGCCACAAACCCAGCAAGAACAGCAGATCCAGGTTCAGCAGCCGCAGCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198218_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.252
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0061916=CARD=WD(100=47.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGTGAGGAGAAAACCC
R:
ATTGCAGAGTCCTTAGGGTTC
Band lengths:
145-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)