BtaEX0029266 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018924 | QRICH1
Description
Bos taurus glutamine-rich 1 (QRICH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001098015]
Coordinates
chr22:51492855-51502667:+
Coord C1 exon
chr22:51492855-51493002
Coord A exon
chr22:51494494-51494553
Coord C2 exon
chr22:51502338-51502667
Length
60 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTCTGTCTTCTTCAGAAT
3' ss Score
11.99
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GAGGGTTGAATGTAAGATGGCGCCCAGGGAGCTGTGAGGGGAAAATCCTGTCGGTCTTGGAGCGGCGACGGCAGAACCGGGGCCCCGAGCGGTGCGGCGGGGCCGGCGGGTAGAACGGCGGCGGTGGCGGCGGCGGCGACGTCGCCGG
Seq A exon
AATGTTACAAGTCTTAAGAACTCAGGACAAGCAGCAGAAATGTATGCACCATGGTGACTG
Seq C2 exon
GAACCCTGAGGACTCTGCAATATGAATAATTCTCTGGAGAACACCATCTCCTTTGAAGAATACATCCGAGTGAAGGCGCGGTCTGTCCCGCAACACAGGATGAAGGAATTTCTGGACTCGCTAGCCTCTAAGGGGCCAGAAGCCCTTCAGGAGTTCCAGCAGACAGCCACCACTACCATGGTGTACCAGCAGGGTGGGAACTGCATTTACACAGACAGCACCGAAGTGGCCGGGTCTTTGCTTGAACTTGCCTGTCCAGTCACCACGAGTGTTCAGCCTCAAACCCAGCCAGAACAGCAGATCCAGGTTCAACAGCCACAGCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018924_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.350
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0061916=CARD=WD(100=47.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGGGAAAATCCTGTCGGT
R:
ATTGCAGAGTCCTCAGGGTTC
Band lengths:
135-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development