DreINT0123183 @ danRer10
Intron Retention
Gene
ENSDARG00000019797 | qrich1
Description
glutamine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8204]
Coordinates
chr11:17880651-17883283:-
Coord C1 exon
chr11:17883089-17883283
Coord A exon
chr11:17880928-17883088
Coord C2 exon
chr11:17880651-17880927
Length
2161 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
3' ss Seq
ACCCTTTGCTTGTGTTCTAGGCT
3' ss Score
10.32
Exon sequences
Seq C1 exon
GCTTGCGGCAGCAGTGGAGCCGGAAGGGGGAGCTGCGATTCCGTCCCCGCCTTCACGCTACAGGACAGCCCGGGGTCTAGCGCTGTCACAGCAGGCCTACTTCCGTCAGCTCTATCGCAAACATTATTATTAAAAAAAACACAATTACGGCCATCCAAGCCTTCCAAGCAGCGCATTTGTGTGTTTTCCACTACG
Seq A exon
GTAGGACATGTTTGCGCCCGGCCGCATCGGGCTTTCAATGCTTTCATTTATGTGTGTAGCAGAATAAGCACACGTCACGACATAAATCGCTCTTAAATGTTGACAAATGCATTGCGCTGCAAAAATACCGAGATAGAGCAAAGCAACCGGACTTGCCGTGTGCACGGCCAGCTTTAGCTGAGCTTTAGTGGGTTTTTGTTTTTTGAACGGCGTGTTTTGGCGGAAATTGCTTTGGCTTTTATTTAAGGTAGCATGGGAAGATTAGCACGCGAGCTCACGTTAGCCCCACATCTGCGCGCGCGATGCCACATCTACCGCGGGAATAATGCTTAATGCCACACAACAGCATATCAAAAATGTATTTAATATCCCAATGCGATTACTTGCGCCCGCTTCTGTGCGTTTTGGAGTTTCACTTGACAAAGGTTAGCGCGTTAGCATTAATGCTAGCTTATTTTCGGGGCAAAGCATTGAGTGGTCCAGTAACGTTGCTTGATTTACCGTAAGCAAAGCGAGTTTACAAACACACAAATACCGTTTATGTTATGTGATCGTTCATATTAAGGTTTGGTTTGTGATTCGAGAGGAGCCTCAATACAGCTCTTTTATTTTGCTTCAAGGGGTCCAAAGTCCAGCAAGGTTAGAGGCTCTTTCAGTCTGAATGCTTCATATACAGAGCTCTTCATCACTAAAATATCACATGAAACACCTTTAATCTTTAGTTTAAGCAATTATCTGTACATTTTAAAAGAATGCTTGCATAATTCACATGTTTGTAGGATTGGCTATTCAAAATTCAACCAGATCTGCATTGTGTGCAGAGATTCTATTGAATGATTGATGTAACAATGTGAAGCGAGCTGCTATGGGCGATTGGGTTTACAGTCTTCAGAGTTAACTGTATGCTATAGGTTTTTCCTAATATTTCAAGCCTGAAACATGGAATATTTTATATTTACCTAATGTATTTTTATTTGCAAATAAATACAATTATTTTCATTTTTAATGTTATTAGTTAGCTTTAAAATAAAACACAAATGAACATTGCAAATCTATGCATGTGAAATCAGAGCTGTTTTATATGTAAACGGATACATGCATGCATCAATGTATTGCAAATTATGCATATAAGCATATTTGTATATTACAATAAAACAAGTTTATTTTGTGCAGTCTCCAAGGGTTTATGTTTCAAGAACGTAAAAAAACGAAAACCGATTTCCTTTGTTTTTAACATATTTTGCCTGGAGAATACAGCGTCATTATAACTCTGCCTATTTACATTTACAAAAATGACTAATGACTAGGGATGTAACAATTCATACCATTCACAATACTAATCTCATGATTTACGATATAGTCACAATTTAAAAAAAAATTAAACAAATTGAAGGTGAAGTGCCCTTTCGTTTTTTTCTTAAATGCTGCACATTTTTTGTAAAATAATAAATTTTCTGCCATAACTAAATTGCTAAAAACAAATGAAAAAAATAAAGAATAATACAAACTAAAGAAGTAAAAAAAAAACATCTTCTCATTTTCGCTATAAAACACTGATGCACAGTGATCGCCATAGCATTCAAAGCTGCAAAGCATAATTTTTTCATATAGACATCTGTGACAGTCGTTCTATTAGTACACGTCTTTTTGCAATATTTGCTCACACTTTGTGTTTCGTCCCACCGATTGCTCGGCGCTGATGTGCAGGTAAAGTAAGTTTGCACCTGTAAAGAGCGCCCCCACTGTTCAAAAAATGTAACCATTCATTCAACATGTCTACCGATTTGAATCGTCACATATTTGAATTGATTTTCAACCGACTCACGGTGAATCGTTACATCCCTACTACAAACACTGTAATGCAGGCCAGGCTAGTAATTGGCAATGTCACCTCGTATAGAAACACTACAGCCCTGCACACAGCCATTAGTTAAATTTGTCATCTTTGTTTTGGTTAGACAAGTACTAACAAATCCAAAGACTGAACACATAACATGCATGTGTGTTTTATAATAGTTTGTTCATTTTTAGAGTTTACACAAAGACAATAATGGTATCTTTGGTAACTCCCAAATGCTGCTGTTGTGTAAATAAATGACCAGAATGCACAATATAAACATGTCTTGTAAATGTAAACGTATACCCTTTGCTTGTGTTCTAG
Seq C2 exon
GCTCCTGTACAGGGTGGACTGACCTGTCATGAATGAGCCCATTGAAGGCGGTGCGATCTCGTTCGACGAGTATGTGCGGCAGAAGGCGCGCACTATACCTCAGCACCGCATGAAAGAGTTCCTGGAGTCGCTGGCCTCCAAAGGCCCAGAGGTGTTGCAGGAGTTCAGCCAGCAGACCAGCGGCACCACAACCACAATGGTGTACCAACAGGGTGCCAACTGCATCTACACGGACAGCACAGAGGTGGCGGGCTCATTGCTGGAGCTGGCATGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019797:ENSDART00000040171:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.169
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF077816=Reovirus_Mu2=PU(69.5=88.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]