MmuALTD0011454-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:162670883-162671053:-
Coord C1 exon
chr1:162671015-162671053
Coord A exon
chr1:162670994-162671014
Coord C2 exon
chr1:162670883-162670930
Length
21 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
AATTTGTTTTGGTTTCTCAGCAC
3' ss Score
5.41
Exon sequences
Seq C1 exon
GTGGATGTGGGCAGAGAGGTTTGCAGAACTGAAATGGAG
Seq A exon
GTCAGAGCTTCGTTCCAGAAG
Seq C2 exon
CACACAGATGCCACTTCTATAAAGGATGATGGGAAGCCACAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721-1-2,2-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.771
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTGGGCAGAGAGGTTTG
R:
CTGTGGCTTCCCATCATCCTT
Band lengths:
79-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: