MmuEX0038431 @ mm9
Exon Skipping
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:162669027-162671094:-
Coord C1 exon
chr1:162670994-162671094
Coord A exon
chr1:162670883-162670930
Coord C2 exon
chr1:162669027-162669219
Length
48 bp
Sequences
Splice sites
3' ss Seq
AATTTGTTTTGGTTTCTCAGCAC
3' ss Score
5.41
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
CAGGTTCTACTTTTTCTTTTGTTACTCTTTAGTTGTTCCAGGTGGATGTGGGCAGAGAGGTTTGCAGAACTGAAATGGAGGTCAGAGCTTCGTTCCAGAAG
Seq A exon
CACACAGATGCCACTTCTATAAAGGATGATGGGAAGCCACAGCTGAAG
Seq C2 exon
ATAGCTTCCAATGGTGATGAGCAGTTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAGGACAAAGCGGTCTACCTGTTGATTGCCAAGGATCCAGTGAGATTTCAGACTGTCCCTTTGGAGATGTGCCGGCCAGCCAAACAACTAAGCCGCCTCTCCAGTTAATTTTGGATCCATCTAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721-'2-3,'2-2,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.771 C2=0.892
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTGGGCAGAGAGGTTTG
R:
ACAGGTAGACCGCTTTGTCCT
Band lengths:
144-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types